Variant report

Variant	rs12280877
Chromosome Location	chr11:10105424-10105425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10128609	1.00[EUR][1000 genomes]
rs10128701	1.00[EUR][1000 genomes]
rs11042565	1.00[EUR][1000 genomes]
rs11042584	1.00[EUR][1000 genomes]
rs11042616	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042619	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042631	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042672	1.00[EUR][1000 genomes]
rs11042674	1.00[EUR][1000 genomes]
rs11042691	1.00[EUR][1000 genomes]
rs11042694	1.00[EUR][1000 genomes]
rs11042696	1.00[EUR][1000 genomes]
rs11042697	1.00[EUR][1000 genomes]
rs11042698	1.00[EUR][1000 genomes]
rs11042701	1.00[EUR][1000 genomes]
rs11042705	1.00[EUR][1000 genomes]
rs11042706	1.00[EUR][1000 genomes]
rs11042707	1.00[EUR][1000 genomes]
rs11042708	1.00[EUR][1000 genomes]
rs11042709	1.00[EUR][1000 genomes]
rs11042710	1.00[EUR][1000 genomes]
rs11042711	1.00[EUR][1000 genomes]
rs11042715	1.00[EUR][1000 genomes]
rs12269976	1.00[EUR][1000 genomes]
rs12270278	1.00[EUR][1000 genomes]
rs12270822	1.00[EUR][1000 genomes]
rs12271159	1.00[EUR][1000 genomes]
rs12271480	1.00[EUR][1000 genomes]
rs12272306	1.00[EUR][1000 genomes]
rs12274021	1.00[EUR][1000 genomes]
rs12275641	1.00[EUR][1000 genomes]
rs12276925	1.00[EUR][1000 genomes]
rs12277936	1.00[EUR][1000 genomes]
rs12279495	1.00[EUR][1000 genomes]
rs12279727	1.00[EUR][1000 genomes]
rs12279936	1.00[EUR][1000 genomes]
rs12281072	1.00[EUR][1000 genomes]
rs12282728	1.00[EUR][1000 genomes]
rs12285084	1.00[EUR][1000 genomes]
rs12287964	1.00[EUR][1000 genomes]
rs12288833	1.00[EUR][1000 genomes]
rs12291188	1.00[EUR][1000 genomes]
rs12291783	1.00[EUR][1000 genomes]
rs12292901	1.00[EUR][1000 genomes]
rs12294052	1.00[EUR][1000 genomes]
rs12294064	1.00[EUR][1000 genomes]
rs13377561	1.00[EUR][1000 genomes]
rs1372812	1.00[EUR][1000 genomes]
rs16907612	1.00[EUR][1000 genomes]
rs16907632	1.00[EUR][1000 genomes]
rs4537746	1.00[EUR][1000 genomes]
rs55919524	1.00[EUR][1000 genomes]
rs56948226	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57138875	1.00[EUR][1000 genomes]
rs57672320	1.00[EUR][1000 genomes]
rs58354844	1.00[EUR][1000 genomes]
rs59629505	1.00[EUR][1000 genomes]
rs59651099	1.00[EUR][1000 genomes]
rs59928017	1.00[EUR][1000 genomes]
rs60051250	1.00[EUR][1000 genomes]
rs7942109	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10108400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:10101800-10108400	Weak transcription	Ovary	ovary
4	chr11:10102800-10106200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:10105200-10105600	Enhancers	HUVEC	blood vessel
6	chr11:10105400-10105600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:10105400-10105600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:10105400-10105600	ZNF genes & repeats	Left Ventricle	heart
9	chr11:10105400-10106200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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