Variant report

Variant	rs59729712
Chromosome Location	chr11:17085370-17085371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16967480..16968226-chr11:17084925..17085584,5	MCF-7	breast:
2	chr11:16966859..16968159-chr11:17084631..17085602,16	MCF-7	breast:
3	chr11:16957436..16957968-chr11:17084808..17085604,2	MCF-7	breast:
4	chr11:16967205..16968144-chr11:17084611..17085599,4	K562	blood:
5	chr11:16809483..16810382-chr11:17084674..17085567,3	MCF-7	breast:
6	chr11:16809642..16810608-chr11:17084703..17085602,3	K562	blood:
7	chr11:17085165..17088143-chr11:17093678..17095207,2	MCF-7	breast:
8	chr11:16965139..16965875-chr11:17084804..17085626,2	K562	blood:
9	chr11:16957493..16958020-chr11:17084682..17085371,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60479979	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114716	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431225	1.00[AMR][1000 genomes]
rs73431262	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942085	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947814	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
2	chr11:17070600-17088400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:17079400-17094600	Weak transcription	Primary B cells from cord blood	blood
4	chr11:17083800-17093800	Weak transcription	A549	lung
5	chr11:17084400-17095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:17084800-17095200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:17085000-17085400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:17085200-17085400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:17085200-17085400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:17085200-17085400	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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