Variant report

Variant	rs7942085
Chromosome Location	chr11:17062454-17062455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11603765	1.00[CHB][hapmap]
rs11604470	1.00[CHB][hapmap]
rs11604561	1.00[CHB][hapmap]
rs11607974	1.00[CHB][hapmap]
rs11827240	0.84[YRI][hapmap]
rs16924899	1.00[CHB][hapmap]
rs16933823	1.00[CHB][hapmap]
rs16933827	1.00[CHB][hapmap]
rs17647408	1.00[CHB][hapmap]
rs2040859	1.00[CHB][hapmap]
rs59729712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60479979	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103869	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114716	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431225	1.00[AMR][1000 genomes]
rs73431262	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7933318	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7947814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17059000-17067200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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