Variant report

Variant	rs59739807
Chromosome Location	chr15:51913452-51913453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43424880..43427064-chr15:51913097..51915072,2	MCF-7	breast:
2	chr15:51828885..51831420-chr15:51912654..51914673,2	K562	blood:
3	chr15:51898533..51902972-chr15:51911457..51915866,6	MCF-7	breast:
4	chr15:51893271..51898734-chr15:51911463..51916763,7	K562	blood:
5	chr15:51901451..51903803-chr15:51912032..51914694,2	K562	blood:
6	chr15:51904383..51907963-chr15:51911974..51914714,3	K562	blood:
7	chr15:51911576..51916583-chr15:52027382..52031699,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction
ENSG00000263437	Chromatin interaction
ENSG00000137842	Chromatin interaction
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55895971	1.00[AMR][1000 genomes]
rs58481470	1.00[AMR][1000 genomes]
rs74013218	1.00[AMR][1000 genomes]
rs74013275	1.00[AMR][1000 genomes]
rs74013277	1.00[AMR][1000 genomes]
rs74016420	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51903600-51913600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:51904200-51914000	Weak transcription	Lung	lung
3	chr15:51906200-51914000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:51906200-51914000	Weak transcription	Ovary	ovary
5	chr15:51906200-51914000	Weak transcription	Small Intestine	intestine
6	chr15:51906800-51914200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:51907000-51914000	Weak transcription	Psoas Muscle	Psoas
8	chr15:51911400-51915800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:51911600-51916000	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr15:51911800-51914000	Weak transcription	Esophagus	oesophagus
11	chr15:51911800-51914400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:51912200-51914000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:51912200-51914200	Active TSS	Brain Germinal Matrix	brain
14	chr15:51912400-51913600	Flanking Active TSS	GM12878-XiMat	blood
15	chr15:51912600-51913800	Flanking Active TSS	A549	lung
16	chr15:51912600-51914400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:51912800-51913600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:51912800-51913600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:51912800-51913600	Flanking Active TSS	Brain Angular Gyrus	brain
20	chr15:51912800-51913600	Flanking Active TSS	Hela-S3	cervix
21	chr15:51912800-51913600	Enhancers	HepG2	liver
22	chr15:51912800-51913800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr15:51912800-51913800	Enhancers	NHEK	skin
24	chr15:51912800-51914000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:51912800-51914200	Active TSS	Primary B cells from cord blood	blood
26	chr15:51912800-51914400	Flanking Active TSS	Dnd41	blood
27	chr15:51912800-51914800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr15:51912800-51915000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:51912800-51915400	Active TSS	Primary T cells from cord blood	blood
30	chr15:51912800-51915400	Active TSS	Fetal Brain Female	brain
31	chr15:51912800-51915600	Active TSS	Brain Cingulate Gyrus	brain
32	chr15:51912800-51915800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:51912800-51915800	Active TSS	NHLF	lung
34	chr15:51912800-51916600	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr15:51913000-51913600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:51913000-51913600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr15:51913000-51913600	Enhancers	Adipose Nuclei	Adipose
38	chr15:51913000-51913600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
39	chr15:51913000-51913600	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr15:51913000-51913600	Enhancers	Stomach Mucosa	stomach
41	chr15:51913000-51913800	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr15:51913000-51913800	Flanking Active TSS	Fetal Lung	lung
43	chr15:51913000-51913800	Enhancers	HSMM	muscle
44	chr15:51913000-51914000	Enhancers	Fetal Heart	heart
45	chr15:51913000-51914200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:51913000-51914400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
47	chr15:51913000-51914400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr15:51913000-51914600	Active TSS	Right Atrium	heart
49	chr15:51913000-51914800	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr15:51913000-51915400	Active TSS	HUES6 Cell Line	embryonic stem cell

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