Variant report

Variant	rs74016420
Chromosome Location	chr15:51939423-51939424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51939054..51940894-chr15:52070011..52072606,2	MCF-7	breast:
2	chr15:51923743..51925497-chr15:51937035..51939547,2	K562	blood:
3	chr15:51938171..51940025-chr15:52042843..52045224,2	K562	blood:
4	chr15:51933560..51938280-chr15:51939228..51942863,5	MCF-7	breast:
5	chr15:51908587..51912201-chr15:51937808..51939895,3	K562	blood:
6	chr15:51932004..51935081-chr15:51938073..51941349,3	K562	blood:
7	chr15:51932533..51935981-chr15:51938073..51941349,3	K562	blood:
8	chr15:51914680..51916767-chr15:51938237..51940151,2	MCF-7	breast:
9	chr15:51938680..51944458-chr15:52065543..52071230,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000104093	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55895971	1.00[AMR][1000 genomes]
rs58481470	1.00[AMR][1000 genomes]
rs59739807	1.00[AMR][1000 genomes]
rs74013218	1.00[AMR][1000 genomes]
rs74013275	1.00[AMR][1000 genomes]
rs74013277	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51938400-51940400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:51938800-51940200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:51938800-51940400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:51938800-51940400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr15:51939000-51939800	Enhancers	Primary hematopoietic stem cells	blood
6	chr15:51939000-51939800	Enhancers	Duodenum Mucosa	Duodenum
7	chr15:51939000-51940000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:51939000-51940000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:51939200-51939600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:51939200-51939800	Enhancers	Osteobl	bone
11	chr15:51939400-51939800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:51939400-51939800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:51939400-51939800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:51939400-51939800	Enhancers	Fetal Intestine Small	intestine
15	chr15:51939400-51939800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr15:51939400-51939800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr15:51939400-51939800	Enhancers	GM12878-XiMat	blood
18	chr15:51939400-51939800	Enhancers	HMEC	breast
19	chr15:51939400-51939800	Enhancers	HUVEC	blood vessel
20	chr15:51939400-51939800	Flanking Active TSS	K562	blood
21	chr15:51939400-51939800	Enhancers	NHEK	skin
22	chr15:51939400-51940000	Enhancers	Stomach Mucosa	stomach

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