Variant report

Variant	rs59749343
Chromosome Location	chr9:110473649-110473650
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110249469..110252928-chr9:110471140..110477348,7	MCF-7	breast:
2	chr9:110250743..110253543-chr9:110473629..110475933,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58217314	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60041652	0.89[EUR][1000 genomes]
rs73516939	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110466200-110474200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:110467200-110475800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:110467200-110475800	Enhancers	HMEC	breast
4	chr9:110470000-110479600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:110470600-110473800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:110470600-110474600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:110470800-110474000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:110470800-110474400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:110472200-110483000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:110472400-110475200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:110472400-110475200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:110472400-110475600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:110472400-110475600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:110472600-110475200	Enhancers	NHLF	lung
15	chr9:110472600-110475200	Enhancers	Osteobl	bone
16	chr9:110472800-110475200	Enhancers	HSMM	muscle
17	chr9:110472800-110475200	Enhancers	NHDF-Ad	bronchial
18	chr9:110473200-110474000	Enhancers	Fetal Muscle Leg	muscle
19	chr9:110473200-110474200	Enhancers	Hela-S3	cervix
20	chr9:110473200-110474400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:110473200-110475200	Enhancers	Placenta	Placenta
22	chr9:110473200-110475800	Enhancers	NHEK	skin
23	chr9:110473400-110473800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr9:110473400-110474000	Enhancers	Lung	lung
25	chr9:110473400-110474200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:110473400-110474200	Enhancers	Colon Smooth Muscle	Colon
27	chr9:110473400-110475200	Enhancers	A549	lung
28	chr9:110473400-110475400	Enhancers	NH-A	brain
29	chr9:110473400-110475600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:110473400-110475600	Enhancers	Fetal Intestine Small	intestine
31	chr9:110473400-110475800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr9:110473400-110475800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:110473400-110475800	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr9:110473600-110474200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr9:110473600-110474200	Enhancers	Spleen	Spleen
36	chr9:110473600-110474400	Enhancers	HSMMtube	muscle
37	chr9:110473600-110474800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:110473600-110475200	Enhancers	HUVEC	blood vessel
39	chr9:110473600-110475400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr9:110473600-110475600	Enhancers	Fetal Intestine Large	intestine
41	chr9:110473600-110476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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