Variant report

Variant	rs60041652
Chromosome Location	chr9:110464114-110464115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58217314	0.85[EUR][1000 genomes]
rs59749343	0.89[EUR][1000 genomes]
rs73516939	0.92[EUR][1000 genomes]
rs73653645	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110462000-110465400	Weak transcription	Stomach Mucosa	stomach
2	chr9:110463000-110464200	Enhancers	Spleen	Spleen
3	chr9:110463200-110464200	Weak transcription	Gastric	stomach
4	chr9:110463200-110465400	Weak transcription	Right Atrium	heart
5	chr9:110463400-110465400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:110463400-110467000	Weak transcription	Fetal Lung	lung
7	chr9:110463600-110464800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:110463600-110465400	Weak transcription	Left Ventricle	heart
9	chr9:110463600-110465400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:110463600-110465600	Weak transcription	Adipose Nuclei	Adipose
11	chr9:110463600-110465600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:110463600-110466000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr9:110463600-110466000	Weak transcription	NHLF	lung
14	chr9:110463600-110466800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:110463600-110468600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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