Variant report

Variant	rs73653645
Chromosome Location	chr9:110475875-110475876
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60041652	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110470000-110479600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:110472200-110483000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:110473600-110476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:110473800-110476000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:110474000-110476000	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:110474000-110477200	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:110474200-110479600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:110474600-110479600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:110475200-110476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:110475200-110476000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr9:110475200-110476400	Weak transcription	Placenta	Placenta
12	chr9:110475600-110477000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:110475600-110478200	Weak transcription	Fetal Intestine Small	intestine
14	chr9:110475600-110478800	Weak transcription	Fetal Intestine Large	intestine
15	chr9:110475600-110479800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:110475800-110479600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr9:110475800-110483600	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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