Variant report

Variant	rs59758158
Chromosome Location	chr10:55424949-55424950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11003655	1.00[AMR][1000 genomes]
rs11003675	1.00[AMR][1000 genomes]
rs12241786	1.00[AMR][1000 genomes]
rs55888113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56129872	1.00[AMR][1000 genomes]
rs61358536	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61365281	1.00[AMR][1000 genomes]
rs74134707	1.00[AMR][1000 genomes]
rs74134728	1.00[AMR][1000 genomes]
rs74134731	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134732	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134747	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134791	1.00[AMR][1000 genomes]
rs74137203	1.00[AMR][1000 genomes]
rs9988784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757386	chr10:55357136-55531037	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2759753	chr10:55357136-55586930	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2758220	chr10:55360612-55586930	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1047468	chr10:55361202-55459392	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv515498	chr10:55371601-55454152	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv8666	chr10:55371860-55459830	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1044236	chr10:55372005-55426888	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1040454	chr10:55372005-55457884	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv470941	chr10:55378668-55454151	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3693056	chr10:55378668-55454152	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv438174	chr10:55378668-55454152	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv1054744	chr10:55379719-55456587	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1051388	chr10:55379719-55457393	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1053647	chr10:55379719-55457884	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv1043179	chr10:55379719-55463942	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv2760118	chr10:55379731-55457896	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv1035366	chr10:55380381-55457306	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1046336	chr10:55380381-55457884	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv34540	chr10:55383168-55457394	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv34353	chr10:55383168-55479314	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv895410	chr10:55385962-55577022	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
30	esv2755263	chr10:55394094-55546994	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
31	nsv895413	chr10:55395380-55446058	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv895414	chr10:55395380-55449214	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv895415	chr10:55395380-55473976	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv895416	chr10:55395380-55539954	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
35	nsv895418	chr10:55407502-55429765	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv550934	chr10:55408649-55431082	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
37	nsv467209	chr10:55408854-55431082	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
38	nsv550935	chr10:55408854-55431082	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
39	nsv895419	chr10:55408854-55449214	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
40	nsv895420	chr10:55408854-55473976	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv895421	chr10:55408854-55539954	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
42	nsv895422	chr10:55410001-55446058	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
43	nsv895423	chr10:55410001-55461257	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
44	nsv428556	chr10:55413202-55586930	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
45	nsv550936	chr10:55417490-55447975	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
46	nsv467210	chr10:55417666-55434940	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
47	nsv550937	chr10:55417666-55434940	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
48	nsv467211	chr10:55418647-55436702	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
49	nsv550938	chr10:55418647-55436702	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
50	nsv550939	chr10:55418647-55447975	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55423400-55426600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55424000-55425000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:55424000-55425000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:55424200-55425000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:55424200-55425000	Enhancers	Fetal Heart	heart
6	chr10:55424200-55425000	Enhancers	Fetal Intestine Small	intestine
7	chr10:55424200-55425000	Enhancers	Fetal Stomach	stomach
8	chr10:55424400-55425000	Enhancers	Fetal Muscle Leg	muscle
9	chr10:55424600-55425000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:55424600-55425000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:55424600-55425000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:55424600-55425000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:55424800-55425000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr10:55424800-55425000	Enhancers	Fetal Kidney	kidney
15	chr10:55424800-55425000	Enhancers	Fetal Lung	lung
16	chr10:55424800-55425000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr10:55424800-55426600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links