Variant report

Variant	rs59778746
Chromosome Location	chr10:4178712-4178713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11252377	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12259410	0.90[EUR][1000 genomes]
rs4881298	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4881300	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68154769	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7071854	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913465	0.86[EUR][1000 genomes]
rs7923955	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4174800-4178800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr10:4174800-4179600	Weak transcription	HSMMtube	muscle
3	chr10:4174800-4187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4175000-4180000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:4177200-4179800	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:4178000-4178800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:4178000-4178800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:4178000-4178800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr10:4178000-4179000	Enhancers	Primary B cells from cord blood	blood
10	chr10:4178000-4179400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:4178400-4179000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:4178600-4179600	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links