Variant report

Variant	rs59796793
Chromosome Location	chr1:45869553-45869554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:45867610..45870070-chr1:45874178..45875869,2	MCF-7	breast:
2	chr1:45865483..45867581-chr1:45869188..45871234,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11803788	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11808204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55680990	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55812863	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60136496	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61281143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61325888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6659464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661693	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665790	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691750	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694590	1.00[AMR][1000 genomes]
rs72892506	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892519	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892536	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892538	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894338	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894353	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72896187	1.00[AMR][1000 genomes]
rs7514911	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7536005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7538197	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7551168	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1014509	chr1:45687523-45887501	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv997548	chr1:45733596-45955845	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv534942	chr1:45733596-45955845	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv482356	chr1:45750459-45915545	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	esv2750837	chr1:45796115-45908263	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	esv1795802	chr1:45819489-46009818	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
8	esv1831217	chr1:45819489-46009818	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
9	nsv530016	chr1:45868543-46069020	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45841400-45889200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:45860200-45869800	Weak transcription	Brain Anterior Caudate	brain
3	chr1:45861200-45874600	Weak transcription	GM12878-XiMat	blood
4	chr1:45867000-45870200	Enhancers	Liver	Liver
5	chr1:45868400-45869600	Enhancers	HepG2	liver
6	chr1:45868600-45870200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:45869200-45869600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:45869400-45885400	Weak transcription	Fetal Intestine Small	intestine

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