The 2.0 version of rSNPBase

Variant report

Variant rs7538197
Chromosome Location chr1:45886808-45886809
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45841400-45889200 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:45875600-45889400 Weak transcription Primary neutrophils fromperipheralblood blood
3 chr1:45876800-45887800 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr1:45877200-45887800 Weak transcription Fetal Intestine Large intestine
5 chr1:45877200-45888200 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:45877400-45889200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr1:45877600-45887400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr1:45877600-45889600 Weak transcription Placenta Placenta
9 chr1:45879000-45887200 Weak transcription Primary hematopoietic stem cells blood
10 chr1:45879600-45887800 Weak transcription Primary monocytes fromperipheralblood blood
11 chr1:45879600-45887800 Weak transcription Brain Anterior Caudate brain
12 chr1:45879800-45889200 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr1:45880000-45887000 Weak transcription Primary B cells from cord blood blood
14 chr1:45880200-45895600 Weak transcription Brain Hippocampus Middle brain
15 chr1:45880800-45890000 Weak transcription Brain Substantia Nigra brain
16 chr1:45883000-45888000 Weak transcription Rectal Smooth Muscle rectum
17 chr1:45884200-45888800 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr1:45884600-45910600 Weak transcription Ovary ovary
19 chr1:45885400-45887000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:45885400-45890200 Weak transcription Left Ventricle heart
21 chr1:45885800-45887600 Weak transcription Fetal Lung lung
22 chr1:45886000-45889800 Weak transcription Gastric stomach
23 chr1:45886400-45887800 Weak transcription Adipose Nuclei Adipose
24 chr1:45886600-45887200 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr1:45886800-45887200 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr1:45886800-45887600 Strong transcription Primary B cells from peripheral blood blood
27 chr1:45886800-45887600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr1:45886800-45887600 Strong transcription Liver Liver
29 chr1:45886800-45888000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:45886800-45888000 Strong transcription Duodenum Mucosa Duodenum
31 chr1:45886800-45908200 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015