Variant report

Variant	rs61325888
Chromosome Location	chr1:45883736-45883737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11803788	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11808204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55680990	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55812863	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59796793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60136496	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61281143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6659464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6661693	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665790	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691750	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694590	1.00[AMR][1000 genomes]
rs72892506	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892519	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892536	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892538	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894338	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72894353	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72896187	1.00[AMR][1000 genomes]
rs7514911	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7536005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7538197	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7551168	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1014509	chr1:45687523-45887501	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv997548	chr1:45733596-45955845	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv534942	chr1:45733596-45955845	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv482356	chr1:45750459-45915545	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	esv2750837	chr1:45796115-45908263	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	esv1795802	chr1:45819489-46009818	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
8	esv1831217	chr1:45819489-46009818	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
9	nsv530016	chr1:45868543-46069020	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
10	nsv945919	chr1:45879534-45884067	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45841400-45889200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:45869400-45885400	Weak transcription	Fetal Intestine Small	intestine
3	chr1:45875600-45889400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:45876800-45887800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:45877000-45886800	Weak transcription	Liver	Liver
6	chr1:45877200-45887800	Weak transcription	Fetal Intestine Large	intestine
7	chr1:45877200-45888200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:45877400-45886800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:45877400-45889200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:45877600-45887400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:45877600-45889600	Weak transcription	Placenta	Placenta
12	chr1:45879000-45887200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr1:45879600-45887800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr1:45879600-45887800	Weak transcription	Brain Anterior Caudate	brain
15	chr1:45879800-45889200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:45880000-45887000	Weak transcription	Primary B cells from cord blood	blood
17	chr1:45880200-45895600	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:45880800-45890000	Weak transcription	Brain Substantia Nigra	brain
19	chr1:45881400-45886800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:45881600-45885400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:45882600-45886600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr1:45882600-45886800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr1:45883000-45888000	Weak transcription	Rectal Smooth Muscle	rectum

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