Variant report

Variant	rs59797025
Chromosome Location	chr7:69174594-69174595
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10487949	0.93[AMR][1000 genomes]
rs12164074	1.00[AMR][1000 genomes]
rs17140848	0.94[ASN][1000 genomes]
rs17140871	0.94[ASN][1000 genomes]
rs17141015	0.83[ASN][1000 genomes]
rs17349245	0.93[AMR][1000 genomes]
rs17353017	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17361399	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17361448	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17362481	1.00[AMR][1000 genomes]
rs17362817	0.93[AMR][1000 genomes]
rs17457848	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17458533	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17459271	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17459369	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17459722	0.93[AMR][1000 genomes]
rs2158741	0.93[AMR][1000 genomes]
rs2191824	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4140975	1.00[ASN][1000 genomes]
rs55638715	0.93[AMR][1000 genomes]
rs58305621	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58974518	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6460529	0.81[ASN][1000 genomes]
rs6460531	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6968472	0.93[AMR][1000 genomes]
rs6970097	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7781686	1.00[AMR][1000 genomes]
rs7790458	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69162000-69186200	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69166600-69175400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:69171400-69176400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:69171600-69174600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:69172000-69175400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:69172000-69180000	Weak transcription	Psoas Muscle	Psoas
7	chr7:69172000-69180400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:69172200-69176200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:69172400-69176800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:69172800-69174600	Enhancers	Brain Angular Gyrus	brain
11	chr7:69172800-69174600	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:69172800-69174600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr7:69173000-69175000	Enhancers	Brain Hippocampus Middle	brain
14	chr7:69173000-69176600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:69173200-69174800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:69173200-69176000	Enhancers	Fetal Brain Male	brain
17	chr7:69173200-69176400	Enhancers	Fetal Brain Female	brain
18	chr7:69173400-69174600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr7:69173400-69174600	Enhancers	Right Atrium	heart
20	chr7:69173400-69175000	Enhancers	Ovary	ovary
21	chr7:69173400-69175800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:69173400-69175800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr7:69173400-69176800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:69173600-69174600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:69173600-69174800	Enhancers	Colon Smooth Muscle	Colon
26	chr7:69173600-69176600	Enhancers	Brain Germinal Matrix	brain
27	chr7:69173800-69174600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:69173800-69174600	Enhancers	Rectal Smooth Muscle	rectum
29	chr7:69173800-69174800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr7:69173800-69174800	Enhancers	Fetal Heart	heart
31	chr7:69173800-69174800	Enhancers	Fetal Lung	lung
32	chr7:69173800-69175800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr7:69174000-69174600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr7:69174000-69174600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr7:69174000-69174600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:69174000-69174600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr7:69174000-69174600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:69174000-69174600	Enhancers	A549	lung
39	chr7:69174000-69174600	Enhancers	NH-A	brain
40	chr7:69174000-69174800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr7:69174000-69175400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr7:69174000-69176600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:69174000-69176600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:69174000-69176800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr7:69174200-69174600	Enhancers	GM12878-XiMat	blood
46	chr7:69174200-69175600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr7:69174400-69174600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:69174400-69174800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr7:69174400-69175600	Weak transcription	Brain Anterior Caudate	brain
50	chr7:69174400-69175600	Weak transcription	Brain Substantia Nigra	brain

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