Variant report

Variant	rs6460529
Chromosome Location	chr7:69268960-69268961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69265403..69267414-chr7:69267477..69269230,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17140848	0.84[ASN][1000 genomes]
rs17140871	0.84[ASN][1000 genomes]
rs17141015	0.82[ASN][1000 genomes]
rs17353017	0.84[ASN][1000 genomes]
rs17361399	0.84[ASN][1000 genomes]
rs17361448	0.84[ASN][1000 genomes]
rs17457848	0.86[ASN][1000 genomes]
rs17458533	0.84[ASN][1000 genomes]
rs17459271	0.82[ASN][1000 genomes]
rs17459369	0.82[ASN][1000 genomes]
rs2191824	0.84[ASN][1000 genomes]
rs4140975	0.81[ASN][1000 genomes]
rs58305621	0.81[ASN][1000 genomes]
rs59797025	0.81[ASN][1000 genomes]
rs60221178	0.81[ASN][1000 genomes]
rs6460531	0.81[ASN][1000 genomes]
rs6943451	1.00[AFR][1000 genomes]
rs6970097	0.84[ASN][1000 genomes]
rs7790458	0.82[ASN][1000 genomes]
rs7804097	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3325495	chr7:69268524-69269108	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69249800-69269600	Weak transcription	Brain Angular Gyrus	brain
2	chr7:69253400-69278800	Weak transcription	Fetal Stomach	stomach
3	chr7:69255000-69276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:69259000-69269200	Weak transcription	Fetal Brain Male	brain
5	chr7:69265000-69270400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:69265800-69269600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:69265800-69269600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:69265800-69273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:69265800-69273600	Weak transcription	HSMMtube	muscle
10	chr7:69265800-69282600	Weak transcription	Pancreas	Pancrea
11	chr7:69266000-69270000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:69266000-69270000	Weak transcription	Fetal Lung	lung
13	chr7:69266000-69270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:69266200-69276600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:69267000-69269800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:69267200-69269600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:69267200-69272600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:69267200-69272600	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:69267200-69275000	Weak transcription	Psoas Muscle	Psoas
20	chr7:69267200-69278400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:69267600-69277200	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:69267800-69279200	Weak transcription	Ovary	ovary
23	chr7:69268200-69269200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:69268200-69272800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:69268200-69278000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:69268400-69269400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:69268400-69269600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:69268400-69269800	Weak transcription	Fetal Intestine Large	intestine
29	chr7:69268400-69278200	Weak transcription	Right Atrium	heart
30	chr7:69268600-69270200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr7:69268800-69269000	Enhancers	Primary B cells from peripheral blood	blood
32	chr7:69268800-69269000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:69268800-69269600	Active TSS	GM12878-XiMat	blood
34	chr7:69268800-69269800	Weak transcription	Fetal Intestine Small	intestine
35	chr7:69268800-69270600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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