Variant report

Variant	rs6460531
Chromosome Location	chr7:69299418-69299419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10487941	1.00[AMR][1000 genomes]
rs12164074	0.93[AMR][1000 genomes]
rs17140848	0.91[ASN][1000 genomes]
rs17140871	0.91[ASN][1000 genomes]
rs17141015	0.92[ASN][1000 genomes]
rs17353017	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17361399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17361448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17362481	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17362817	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17363468	0.84[EUR][1000 genomes]
rs17364237	1.00[AMR][1000 genomes]
rs17457848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17458533	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17459271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17459369	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17459722	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2191824	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4140975	0.84[ASN][1000 genomes]
rs58305621	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58974518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59797025	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6460529	0.81[ASN][1000 genomes]
rs6970097	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6975213	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7781686	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7790458	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv532781	chr7:69297250-69330796	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538919	chr7:69298265-69311376	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69288200-69304800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:69288600-69304800	Weak transcription	Ovary	ovary
3	chr7:69290400-69302400	Weak transcription	Fetal Stomach	stomach
4	chr7:69293200-69302000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:69293600-69304400	Weak transcription	Primary B cells from cord blood	blood
6	chr7:69293600-69310800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:69296200-69302200	Weak transcription	Brain Germinal Matrix	brain
8	chr7:69296400-69302400	Weak transcription	Brain Substantia Nigra	brain
9	chr7:69296400-69304600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:69296600-69304800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:69297200-69300600	Strong transcription	Primary B cells from peripheral blood	blood
12	chr7:69297400-69302400	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:69297600-69301400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:69297600-69302000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:69297600-69302000	Weak transcription	NH-A	brain
16	chr7:69299000-69299800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:69299000-69299800	Enhancers	Fetal Brain Male	brain
18	chr7:69299000-69299800	Enhancers	Fetal Brain Female	brain
19	chr7:69299000-69300000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:69299000-69300000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr7:69299000-69300200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:69299000-69302200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr7:69299000-69306800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr7:69299000-69306800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr7:69299200-69299600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr7:69299200-69299600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr7:69299200-69299600	Enhancers	Fetal Lung	lung
28	chr7:69299200-69299800	Enhancers	Colon Smooth Muscle	Colon
29	chr7:69299200-69300000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr7:69299200-69300000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:69299200-69300200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr7:69299200-69300400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr7:69299400-69299600	Enhancers	Fetal Thymus	thymus
34	chr7:69299400-69299800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr7:69299400-69299800	Enhancers	Fetal Intestine Small	intestine
36	chr7:69299400-69300200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:69299400-69303600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links