Variant report
| Variant | rs59804958 |
|---|---|
| Chromosome Location | chr2:212642845-212642846 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10432443 | 0.80[AMR][1000 genomes] |
| rs10432444 | 0.80[AMR][1000 genomes] |
| rs10432445 | 0.80[AMR][1000 genomes] |
| rs10432526 | 0.82[AMR][1000 genomes] |
| rs10432527 | 0.80[AMR][1000 genomes] |
| rs10932397 | 0.80[AMR][1000 genomes] |
| rs12104496 | 0.92[ASN][1000 genomes] |
| rs13005722 | 0.92[ASN][1000 genomes] |
| rs35419573 | 0.82[AMR][1000 genomes] |
| rs35623699 | 0.80[AMR][1000 genomes] |
| rs35720933 | 0.80[AMR][1000 genomes] |
| rs35870876 | 0.80[AMR][1000 genomes] |
| rs4672625 | 0.94[ASN][1000 genomes] |
| rs4673633 | 0.92[ASN][1000 genomes] |
| rs56017633 | 0.80[AMR][1000 genomes] |
| rs57367594 | 0.80[AMR][1000 genomes] |
| rs59568831 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs59779307 | 0.83[ASN][1000 genomes] |
| rs60490270 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs60763002 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs61019468 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6722576 | 0.80[AMR][1000 genomes] |
| rs73069350 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73069352 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73069355 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73069363 | 0.95[ASN][1000 genomes] |
| rs7422996 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34128 | chr2:212581485-212857122 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv963773 | chr2:212638550-212645592 | Enhancers Weak transcription | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875784 | chr2:212639948-212761152 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212642400-212648400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
