Variant report

Variant	rs60490270
Chromosome Location	chr2:212641601-212641602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr2:212641318-212641650	HepG2	liver:	n/a	chr2:212641474-212641483 chr2:212641475-212641484 chr2:212641474-212641484 chr2:212641475-212641482 chr2:212641473-212641484 chr2:212641475-212641483

Variant related genes	Relation type
ENSG00000236007	TF binding region
MTND2P23	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10432443	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10432444	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10432445	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10432527	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10932397	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12104496	0.90[ASN][1000 genomes]
rs13005722	0.90[ASN][1000 genomes]
rs35623699	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35720933	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35870876	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4672625	0.92[ASN][1000 genomes]
rs4673633	0.91[ASN][1000 genomes]
rs56017633	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57367594	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59568831	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59779307	0.83[ASN][1000 genomes]
rs59804958	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60763002	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61019468	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6722576	0.82[AMR][1000 genomes]
rs73069350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73069352	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73069355	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73069363	0.93[ASN][1000 genomes]
rs7422996	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv963773	chr2:212638550-212645592	Enhancers Weak transcription	TF binding region	2 gene(s)	inside rSNPs	diseases
3	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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