Variant report

Variant	rs12104496
Chromosome Location	chr2:212659540-212659541
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10432443	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10932396	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs10932397	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10932398	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10932400	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs11685867	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs12052854	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs13004180	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs13004391	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs13005722	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13008293	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs13008313	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs13008370	0.85[JPT][hapmap]
rs13010892	0.85[CHB][hapmap]
rs13013901	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs13023789	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs13024502	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs13025068	0.85[CHB][hapmap]
rs13030400	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs13030927	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs4672625	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4673633	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59568831	0.92[ASN][1000 genomes]
rs59804958	0.92[ASN][1000 genomes]
rs60490270	0.90[ASN][1000 genomes]
rs60763002	0.83[ASN][1000 genomes]
rs61019468	0.83[ASN][1000 genomes]
rs6435665	0.85[CHB][hapmap]
rs6435666	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs6707801	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs6722322	0.91[CHB][hapmap]
rs6731471	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6738017	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs6738219	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs6740215	0.91[CHB][hapmap]
rs6749096	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs6757068	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs73069350	0.92[ASN][1000 genomes]
rs73069352	0.92[ASN][1000 genomes]
rs73069355	0.92[ASN][1000 genomes]
rs73069363	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7419259	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7558449	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7582099	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7593713	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212658800-212664200	Weak transcription	Brain Anterior Caudate	brain
2	chr2:212659200-212663600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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