Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10432443	0.85[JPT][hapmap]
rs10932396	0.83[JPT][hapmap]
rs10932397	0.85[JPT][hapmap]
rs10932398	0.85[JPT][hapmap]
rs10932400	0.85[JPT][hapmap]
rs11685867	0.89[JPT][hapmap]
rs12052854	0.84[JPT][hapmap]
rs12104496	0.85[JPT][hapmap]
rs13004180	0.80[JPT][hapmap]
rs13004391	0.80[JPT][hapmap]
rs13005722	0.81[CHB][hapmap]
rs13008293	0.84[JPT][hapmap]
rs13008313	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs13013901	0.85[JPT][hapmap]
rs13023789	0.85[JPT][hapmap]
rs13024502	0.85[JPT][hapmap]
rs13030400	0.80[JPT][hapmap]
rs13030667	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs13030927	0.85[JPT][hapmap]
rs35761042	0.81[EUR][1000 genomes]
rs4673633	0.84[CHD][hapmap];0.80[JPT][hapmap]
rs59568831	0.80[ASN][1000 genomes]
rs59779307	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59804958	0.82[ASN][1000 genomes]
rs60490270	0.82[ASN][1000 genomes]
rs6435666	0.85[JPT][hapmap]
rs6706030	0.81[CHB][hapmap]
rs6707801	0.85[JPT][hapmap]
rs6722824	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs6731471	0.80[JPT][hapmap]
rs6738017	0.80[JPT][hapmap]
rs6749096	0.80[JPT][hapmap]
rs6757068	0.80[JPT][hapmap]
rs73069350	0.80[ASN][1000 genomes]
rs73069352	0.80[ASN][1000 genomes]
rs73069355	0.80[ASN][1000 genomes]
rs7419259	0.80[JPT][hapmap]
rs7558449	0.84[JPT][hapmap]
rs7582099	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv963773	chr2:212638550-212645592	Enhancers Weak transcription	TF binding region	2 gene(s)	inside rSNPs	diseases
3	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13008370	PLEKHM3	cis	cerebellum	SCAN
rs13008370	ERBB4	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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