Variant report

Variant	rs7558449
Chromosome Location	chr2:212622627-212622628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212621725..212624581-chr2:212630130..212632445,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10205612	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10432443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10432444	0.98[ASN][1000 genomes]
rs10432445	0.98[ASN][1000 genomes]
rs10432526	0.92[ASN][1000 genomes]
rs10432527	0.98[ASN][1000 genomes]
rs10932396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10932397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10932398	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10932400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11685063	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11685867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690747	0.88[ASN][1000 genomes]
rs12052854	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12052855	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12104496	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs12987993	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13003936	0.94[ASN][1000 genomes]
rs13004180	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13004391	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs13005722	0.84[JPT][hapmap]
rs13006962	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13008293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13008313	0.80[CHB][hapmap]
rs13008370	0.84[JPT][hapmap]
rs13010892	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13013901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13020626	0.90[ASN][1000 genomes]
rs13023789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13024502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13025061	0.82[ASN][1000 genomes]
rs13025068	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs13025192	0.97[ASN][1000 genomes]
rs13030400	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13030667	0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs13030927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13032058	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13032070	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34040017	0.97[ASN][1000 genomes]
rs34156641	0.94[ASN][1000 genomes]
rs34269326	0.90[ASN][1000 genomes]
rs34776422	0.90[ASN][1000 genomes]
rs34937662	0.90[ASN][1000 genomes]
rs35419573	0.98[ASN][1000 genomes]
rs35623699	0.98[ASN][1000 genomes]
rs35720933	0.98[ASN][1000 genomes]
rs35726292	0.98[ASN][1000 genomes]
rs35870876	0.98[ASN][1000 genomes]
rs36045110	0.98[ASN][1000 genomes]
rs4673633	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs56017633	0.98[ASN][1000 genomes]
rs57367594	0.98[ASN][1000 genomes]
rs6435665	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6435666	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6435668	0.98[ASN][1000 genomes]
rs6435669	0.98[ASN][1000 genomes]
rs6706030	0.91[CHB][hapmap]
rs6707801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722322	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6722576	0.98[ASN][1000 genomes]
rs6722824	0.86[CHB][hapmap]
rs6731471	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6733063	0.98[ASN][1000 genomes]
rs6733070	0.93[ASN][1000 genomes]
rs6738017	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs6738219	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6740215	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6749096	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs6757068	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67838351	0.98[ASN][1000 genomes]
rs71422755	0.89[ASN][1000 genomes]
rs7419259	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs7422996	0.98[ASN][1000 genomes]
rs7558651	0.98[ASN][1000 genomes]
rs7572424	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7573116	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7582099	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7593713	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212610200-212626600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:212621200-212632800	Weak transcription	Aorta	Aorta

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