Variant report

Variant	rs10932398
Chromosome Location	chr2:212627259-212627260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212625942..212627991-chr2:212629764..212631640,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10205612	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10432443	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10432444	0.98[ASN][1000 genomes]
rs10432445	0.98[ASN][1000 genomes]
rs10432526	0.92[ASN][1000 genomes]
rs10432527	0.98[ASN][1000 genomes]
rs10932396	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10932397	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10932400	0.83[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11685063	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11685867	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690747	0.88[ASN][1000 genomes]
rs12052854	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12052855	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12104496	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs12987993	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13003936	0.94[ASN][1000 genomes]
rs13004180	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13004391	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs13005722	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs13006962	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13008293	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13008370	0.85[JPT][hapmap]
rs13010892	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13013901	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13020626	0.90[ASN][1000 genomes]
rs13023789	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13024502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13025061	0.82[ASN][1000 genomes]
rs13025068	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs13025192	0.97[ASN][1000 genomes]
rs13030400	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13030667	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs13030927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13032058	0.97[ASN][1000 genomes]
rs13032070	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34040017	0.97[ASN][1000 genomes]
rs34156641	0.94[ASN][1000 genomes]
rs34269326	0.90[ASN][1000 genomes]
rs34776422	0.90[ASN][1000 genomes]
rs34937662	0.90[ASN][1000 genomes]
rs35419573	0.98[ASN][1000 genomes]
rs35623699	0.98[ASN][1000 genomes]
rs35720933	0.98[ASN][1000 genomes]
rs35726292	0.98[ASN][1000 genomes]
rs35870876	0.98[ASN][1000 genomes]
rs36045110	0.98[ASN][1000 genomes]
rs4673633	0.81[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap]
rs56017633	0.98[ASN][1000 genomes]
rs57367594	0.98[ASN][1000 genomes]
rs6435665	0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6435666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6435668	0.98[ASN][1000 genomes]
rs6435669	0.98[ASN][1000 genomes]
rs6706030	0.86[CHB][hapmap]
rs6707801	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722322	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6722576	0.98[ASN][1000 genomes]
rs6722824	0.82[CHB][hapmap];0.89[CHD][hapmap]
rs6731471	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6733063	0.98[ASN][1000 genomes]
rs6733070	0.93[ASN][1000 genomes]
rs6738017	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs6738219	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6740215	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs6749096	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs6757068	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67838351	0.98[ASN][1000 genomes]
rs71422755	0.89[ASN][1000 genomes]
rs7419259	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.98[ASN][1000 genomes]
rs7422996	0.98[ASN][1000 genomes]
rs7558449	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558651	0.98[ASN][1000 genomes]
rs7572424	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7573116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7582099	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7593713	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212621200-212632800	Weak transcription	Aorta	Aorta
2	chr2:212626600-212628800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:212626800-212627800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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