Variant report

Variant	rs13030667
Chromosome Location	chr2:212611649-212611650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10175461	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs10432443	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10432444	0.81[ASN][1000 genomes]
rs10432445	0.81[ASN][1000 genomes]
rs10432526	0.86[ASN][1000 genomes]
rs10432527	0.81[ASN][1000 genomes]
rs10932396	0.86[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs10932397	0.86[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs10932398	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10932400	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs11685063	0.82[ASN][1000 genomes]
rs11685867	0.85[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs12052854	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12052855	0.84[ASN][1000 genomes]
rs12469039	0.84[CEU][hapmap]
rs12987993	0.84[ASN][1000 genomes]
rs13003936	0.82[ASN][1000 genomes]
rs13004180	0.82[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs13004391	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs13004899	0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs13008293	0.86[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs13008313	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13008370	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs13010892	0.81[CHB][hapmap]
rs13013901	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs13023789	0.87[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs13024502	0.87[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs13025068	0.82[CHB][hapmap]
rs13025192	0.84[ASN][1000 genomes]
rs13030400	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs13030927	0.87[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs13032058	0.84[ASN][1000 genomes]
rs13032070	0.84[ASN][1000 genomes]
rs34040017	0.82[ASN][1000 genomes]
rs34156641	0.81[ASN][1000 genomes]
rs35419573	0.81[ASN][1000 genomes]
rs35623699	0.81[ASN][1000 genomes]
rs35720933	0.81[ASN][1000 genomes]
rs35726292	0.81[ASN][1000 genomes]
rs35761042	0.92[ASN][1000 genomes]
rs35870876	0.80[ASN][1000 genomes]
rs36045110	0.81[ASN][1000 genomes]
rs56017633	0.81[ASN][1000 genomes]
rs57367594	0.81[ASN][1000 genomes]
rs6435665	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6435666	0.86[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs6435668	0.81[ASN][1000 genomes]
rs6435669	0.81[ASN][1000 genomes]
rs6706030	0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6707801	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6711487	0.80[CEU][hapmap]
rs6722322	0.86[CHB][hapmap]
rs6722576	0.81[ASN][1000 genomes]
rs6722824	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6731471	0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6733063	0.81[ASN][1000 genomes]
rs6738017	0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6738219	0.87[CHB][hapmap]
rs6740215	0.86[CHB][hapmap]
rs6749096	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6757068	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs67838351	0.81[ASN][1000 genomes]
rs7419259	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7422996	0.81[ASN][1000 genomes]
rs7558449	0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7558651	0.80[ASN][1000 genomes]
rs7573116	0.80[ASN][1000 genomes]
rs7582099	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7593713	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7597007	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs7605314	0.88[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212610200-212626600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links