Variant report

Variant	rs10175461
Chromosome Location	chr2:212615935-212615936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12469039	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs13030667	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs6435671	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs6435672	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs6706010	0.80[CHB][hapmap];1.00[YRI][hapmap]
rs6706030	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs6711487	0.89[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6722824	0.89[EUR][1000 genomes]
rs6746063	0.95[ASN][1000 genomes]
rs7570613	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs7576466	0.98[ASN][1000 genomes]
rs7588792	1.00[YRI][hapmap]
rs7597007	0.90[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7605314	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212610200-212626600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:212613400-212616600	Weak transcription	Psoas Muscle	Psoas
3	chr2:212615800-212616200	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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