Variant report

Variant	rs7570613
Chromosome Location	chr2:212629579-212629580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10175461	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs12469039	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs13015253	0.82[JPT][hapmap]
rs6435671	0.81[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs6435672	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs6706010	0.82[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6711487	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6746063	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7576466	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7588792	0.90[YRI][hapmap];0.84[AMR][1000 genomes]
rs7597007	0.92[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7605314	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212621200-212632800	Weak transcription	Aorta	Aorta
2	chr2:212627800-212631000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:212628800-212631400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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