Variant report

Variant	rs7597007
Chromosome Location	chr2:212592044-212592045
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10175461	0.90[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12469039	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap]
rs13004899	0.87[CHB][hapmap]
rs13015253	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13030667	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs6435671	1.00[YRI][hapmap]
rs6435672	1.00[YRI][hapmap]
rs6706010	0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs6706030	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs6711487	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6722824	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs6746063	0.87[ASN][1000 genomes]
rs7570613	0.92[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7576466	0.90[ASN][1000 genomes]
rs7588792	0.90[YRI][hapmap]
rs7605314	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212571200-212594800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:212583600-212595400	Weak transcription	Brain Anterior Caudate	brain
3	chr2:212587400-212595000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:212590400-212594400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:212590400-212594400	Weak transcription	Brain Substantia Nigra	brain
6	chr2:212592000-212592800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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