Variant report

Variant	rs6706010
Chromosome Location	chr2:212608476-212608477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10175461	0.80[CHB][hapmap];1.00[YRI][hapmap]
rs12469039	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs13004899	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs6435671	0.81[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs6435672	0.81[MKK][hapmap];1.00[YRI][hapmap]
rs6711487	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs6746063	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7421820	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs7570613	0.82[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7588792	0.87[ASW][hapmap];0.94[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7597007	0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs7605314	0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212606800-212609000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:212607600-212610000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:212607800-212608600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:212607800-212608800	Enhancers	Fetal Heart	heart
5	chr2:212607800-212609600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:212608000-212608600	Enhancers	Brain Hippocampus Middle	brain
7	chr2:212608000-212608600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr2:212608000-212608800	Enhancers	Brain Angular Gyrus	brain
9	chr2:212608000-212610000	Enhancers	Brain Substantia Nigra	brain
10	chr2:212608000-212610200	Enhancers	Brain Anterior Caudate	brain
11	chr2:212608000-212610200	Enhancers	Brain Cingulate Gyrus	brain
12	chr2:212608200-212608600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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