Variant report

Variant	rs13025068
Chromosome Location	chr2:212602308-212602309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10205612	0.88[ASN][1000 genomes]
rs10432443	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10432444	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10432445	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10432526	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10432527	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10932396	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs10932397	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10932398	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs10932400	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs11685063	0.88[ASN][1000 genomes]
rs11685867	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs11690747	0.95[ASN][1000 genomes]
rs12052854	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs12052855	0.89[ASN][1000 genomes]
rs12104496	0.85[CHB][hapmap]
rs12987993	0.89[ASN][1000 genomes]
rs13003936	0.92[ASN][1000 genomes]
rs13004180	1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs13004391	1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs13008293	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs13010892	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs13013901	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs13015253	0.83[TSI][hapmap]
rs13020626	0.97[ASN][1000 genomes]
rs13023789	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs13024502	0.84[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13025192	0.89[ASN][1000 genomes]
rs13030400	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs13030667	0.82[CHB][hapmap]
rs13030927	0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs13032058	0.89[ASN][1000 genomes]
rs13032070	0.89[ASN][1000 genomes]
rs34040017	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34156641	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34269326	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34776422	0.97[ASN][1000 genomes]
rs34937662	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35419573	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35623699	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35720933	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35726292	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35761042	0.82[ASN][1000 genomes]
rs35870876	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36045110	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4673633	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs56017633	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57367594	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6435665	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6435666	0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs6435668	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6435669	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6706030	0.82[CHB][hapmap]
rs6707801	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs6722322	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs6722576	0.88[ASN][1000 genomes]
rs6722824	0.89[CHD][hapmap];0.81[ASN][1000 genomes]
rs6731471	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs6733063	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6733070	0.85[ASN][1000 genomes]
rs6738017	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs6738219	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6740215	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap]
rs6749096	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs6757068	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs67838351	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71422755	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7419259	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs7422996	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7558449	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs7558651	0.87[ASN][1000 genomes]
rs7572424	0.85[ASN][1000 genomes]
rs7573116	0.86[ASN][1000 genomes]
rs7582099	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs7593713	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212601800-212602600	Enhancers	HUVEC	blood vessel
2	chr2:212602000-212602400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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