Variant report

Variant	rs6435668
Chromosome Location	chr2:212631446-212631447
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:212630495..212633352-chr2:212634766..212636959,3	MCF-7	breast:
2	chr2:212621725..212624581-chr2:212630130..212632445,2	MCF-7	breast:
3	chr2:212625942..212627991-chr2:212629764..212631640,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10205612	0.81[ASN][1000 genomes]
rs10432443	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10432444	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10432445	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10432526	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10432527	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10932396	0.98[ASN][1000 genomes]
rs10932397	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10932398	0.98[ASN][1000 genomes]
rs10932400	0.98[ASN][1000 genomes]
rs11685063	0.97[ASN][1000 genomes]
rs11685867	0.98[ASN][1000 genomes]
rs11690747	0.88[ASN][1000 genomes]
rs12052854	0.97[ASN][1000 genomes]
rs12052855	0.97[ASN][1000 genomes]
rs12987993	0.97[ASN][1000 genomes]
rs13003936	0.94[ASN][1000 genomes]
rs13004180	0.95[ASN][1000 genomes]
rs13004391	0.95[ASN][1000 genomes]
rs13008293	0.98[ASN][1000 genomes]
rs13010892	0.89[ASN][1000 genomes]
rs13013901	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13020626	0.89[ASN][1000 genomes]
rs13023789	0.98[ASN][1000 genomes]
rs13024502	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13025061	0.82[ASN][1000 genomes]
rs13025068	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13025192	0.97[ASN][1000 genomes]
rs13030400	0.96[ASN][1000 genomes]
rs13030667	0.81[ASN][1000 genomes]
rs13030927	0.97[ASN][1000 genomes]
rs13032058	0.97[ASN][1000 genomes]
rs13032070	0.97[ASN][1000 genomes]
rs34040017	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34156641	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34269326	0.92[ASN][1000 genomes]
rs34776422	0.89[ASN][1000 genomes]
rs34937662	0.92[ASN][1000 genomes]
rs35419573	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35623699	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35720933	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35726292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35870876	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36045110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56017633	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57367594	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6435665	0.89[ASN][1000 genomes]
rs6435666	0.98[ASN][1000 genomes]
rs6435669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707801	0.98[ASN][1000 genomes]
rs6722322	0.90[ASN][1000 genomes]
rs6722576	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731471	0.98[ASN][1000 genomes]
rs6733063	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6733070	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6738017	0.98[ASN][1000 genomes]
rs6738219	0.92[ASN][1000 genomes]
rs6749096	0.98[ASN][1000 genomes]
rs6757068	0.97[ASN][1000 genomes]
rs67838351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71422755	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7419259	0.98[ASN][1000 genomes]
rs7422996	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558449	0.98[ASN][1000 genomes]
rs7558651	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7572424	0.97[ASN][1000 genomes]
rs7573116	0.98[ASN][1000 genomes]
rs7582099	0.98[ASN][1000 genomes]
rs7593713	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212621200-212632800	Weak transcription	Aorta	Aorta
2	chr2:212630600-212631800	Enhancers	Dnd41	blood
3	chr2:212630800-212631600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:212630800-212631600	Enhancers	Brain Anterior Caudate	brain
5	chr2:212630800-212631800	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:212631000-212631600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:212631000-212631600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:212631000-212631600	Enhancers	Brain Substantia Nigra	brain
9	chr2:212631000-212631800	Enhancers	Brain Hippocampus Middle	brain
10	chr2:212631000-212632000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:212631000-212632000	Enhancers	Placenta	Placenta
12	chr2:212631200-212631600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr2:212631200-212631600	Active TSS	Duodenum Mucosa	Duodenum
14	chr2:212631200-212632000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr2:212631200-212632000	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr2:212631200-212633200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:212631400-212631600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:212631400-212631800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:212631400-212631800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:212631400-212631800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr2:212631400-212631800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:212631400-212631800	Enhancers	HMEC	breast

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