Variant report

Variant	rs12052854
Chromosome Location	chr2:212619095-212619096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10205612	0.84[ASN][1000 genomes]
rs10432443	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10432444	0.97[ASN][1000 genomes]
rs10432445	0.97[ASN][1000 genomes]
rs10432526	0.91[ASN][1000 genomes]
rs10432527	0.97[ASN][1000 genomes]
rs10932396	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10932397	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10932398	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10932400	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11685063	0.98[ASN][1000 genomes]
rs11685867	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11690747	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12052855	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12104496	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs12987993	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13003936	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13004180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13004391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13006962	0.87[AFR][1000 genomes]
rs13008293	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13008313	0.90[JPT][hapmap]
rs13008370	0.84[JPT][hapmap]
rs13010892	1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs13013901	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs13020626	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13023789	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs13024502	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs13025061	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13025068	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs13025192	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13030400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs13030667	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs13030927	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13032058	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032070	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34040017	0.98[ASN][1000 genomes]
rs34156641	0.97[ASN][1000 genomes]
rs34269326	0.90[ASN][1000 genomes]
rs34776422	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34937662	0.90[ASN][1000 genomes]
rs35419573	0.97[ASN][1000 genomes]
rs35623699	0.97[ASN][1000 genomes]
rs35720933	0.97[ASN][1000 genomes]
rs35726292	0.97[ASN][1000 genomes]
rs35870876	0.96[ASN][1000 genomes]
rs36045110	0.97[ASN][1000 genomes]
rs4673633	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs56017633	0.97[ASN][1000 genomes]
rs57367594	0.97[ASN][1000 genomes]
rs6435665	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6435666	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs6435668	0.97[ASN][1000 genomes]
rs6435669	0.97[ASN][1000 genomes]
rs6706030	0.83[CHB][hapmap]
rs6707801	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs6722322	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6722576	0.97[ASN][1000 genomes]
rs6731471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6733063	0.97[ASN][1000 genomes]
rs6733070	0.91[ASN][1000 genomes]
rs6738017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6738219	0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs6740215	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs6749096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6757068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs67838351	0.97[ASN][1000 genomes]
rs71422755	0.92[ASN][1000 genomes]
rs7419259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7422996	0.97[ASN][1000 genomes]
rs7558449	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7558651	0.96[ASN][1000 genomes]
rs7572424	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7573116	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7582099	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7593713	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212610200-212626600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:212617000-212620800	Weak transcription	Fetal Lung	lung

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