Variant report
| Variant | rs59819551 |
|---|---|
| Chromosome Location | chr4:127434011-127434012 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:127429358..127432829-chr4:127433521..127436584,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10518497 | 0.84[EUR][1000 genomes] |
| rs11098881 | 0.95[ASN][1000 genomes] |
| rs11098882 | 0.95[ASN][1000 genomes] |
| rs12650060 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12651617 | 0.84[EUR][1000 genomes] |
| rs17011254 | 0.84[EUR][1000 genomes] |
| rs28558216 | 0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56358919 | 0.94[ASN][1000 genomes] |
| rs57902647 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs58806415 | 0.84[EUR][1000 genomes] |
| rs59803623 | 0.84[EUR][1000 genomes] |
| rs60596580 | 0.84[EUR][1000 genomes] |
| rs60752116 | 0.84[EUR][1000 genomes] |
| rs61359035 | 0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7687335 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7687529 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7687807 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7687848 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7691736 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv595385 | chr4:127383473-127451806 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 2 | nsv980515 | chr4:127428220-127440820 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:127431800-127438000 | Weak transcription | K562 | blood |
