Variant report

Variant rs598300
Chromosome Location chr18:269728-269729
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:267000-270000 Active TSS HUES64 Cell Line embryonic stem cell
2 chr18:267600-270200 Active TSS Duodenum Smooth Muscle Duodenum
3 chr18:268800-269800 Flanking Active TSS Liver Liver
4 chr18:268800-269800 Flanking Active TSS GM12878-XiMat blood
5 chr18:269000-269800 Enhancers Primary hematopoietic stem cells blood
6 chr18:269000-269800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
7 chr18:269000-269800 Enhancers Primary T helper naive cells from peripheral blood blood
8 chr18:269000-270000 Enhancers Primary monocytes fromperipheralblood blood
9 chr18:269000-270000 Enhancers Primary hematopoietic stem cells short term culture blood
10 chr18:269000-270200 Enhancers Cortex derived primary cultured neurospheres brain
11 chr18:269000-272600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr18:269200-269800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr18:269200-269800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr18:269200-269800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr18:269200-269800 Enhancers Brain Anterior Caudate brain
16 chr18:269200-269800 Enhancers Brain Cingulate Gyrus brain
17 chr18:269200-269800 Enhancers Brain Hippocampus Middle brain
18 chr18:269200-269800 Enhancers Brain Inferior Temporal Lobe brain
19 chr18:269200-269800 Enhancers Brain Substantia Nigra brain
20 chr18:269200-269800 Enhancers Fetal Lung lung
21 chr18:269200-269800 Enhancers Rectal Mucosa Donor 31 rectum
22 chr18:269200-270000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr18:269200-270000 Enhancers iPS-18 Cell Line embryonic stem cell
24 chr18:269200-270000 Enhancers Breast Myoepithelial Primary Cells Breast
25 chr18:269200-270000 Enhancers Primary T killer memory cells from peripheral blood blood
26 chr18:269200-270000 Enhancers Fetal Adrenal Gland Adrenal Gland
27 chr18:269200-270000 Enhancers Skeletal Muscle Female skeletal muscle
28 chr18:269200-270000 Enhancers A549 lung
29 chr18:269200-270200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
30 chr18:269200-270200 Enhancers Dnd41 blood
31 chr18:269200-271600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr18:269200-272400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr18:269200-272600 Weak transcription H9 Cell Line embryonic stem cell
34 chr18:269200-275600 Weak transcription Right Atrium heart
35 chr18:269200-276200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
36 chr18:269400-269800 Flanking Active TSS Fetal Intestine Small intestine
37 chr18:269400-269800 Enhancers Stomach Smooth Muscle stomach
38 chr18:269400-269800 Flanking Active TSS HepG2 liver
39 chr18:269400-269800 Transcr. at gene 5' and 3' K562 blood
40 chr18:269400-270200 Enhancers H1 Cell Line embryonic stem cell
41 chr18:269400-270200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr18:269400-270200 Enhancers iPS-15b Cell Line embryonic stem cell
43 chr18:269400-271000 Enhancers Fetal Intestine Large intestine
44 chr18:269400-271800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr18:269600-269800 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
46 chr18:269600-269800 Flanking Active TSS HUES48 Cell Line embryonic stem cell
47 chr18:269600-269800 Flanking Active TSS HUES6 Cell Line embryonic stem cell
48 chr18:269600-269800 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr18:269600-269800 Flanking Active TSS Duodenum Mucosa Duodenum
50 chr18:269600-269800 Flanking Active TSS Fetal Kidney kidney

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