Variant report

Variant	rs59840223
Chromosome Location	chr11:19109081-19109082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19101141..19102914-chr11:19106636..19109089,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10444252	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10444253	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10444255	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10500837	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024985	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024986	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024987	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024988	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024989	0.99[EUR][1000 genomes]
rs11024990	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024991	0.99[EUR][1000 genomes]
rs11024992	0.99[EUR][1000 genomes]
rs11024993	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024994	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024995	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024996	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024998	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024999	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11025002	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11025004	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11025005	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11025006	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11025007	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11025008	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16936115	0.87[AFR][1000 genomes]
rs16936140	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889769	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889773	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889781	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889786	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889799	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889802	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72891506	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72891507	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72891510	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72907780	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72907782	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72907784	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72907786	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9299952	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19102600-19109400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:19104800-19111800	Weak transcription	Esophagus	oesophagus
3	chr11:19106800-19109200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:19108200-19113400	Enhancers	HUVEC	blood vessel
5	chr11:19108600-19110000	Enhancers	Osteobl	bone
6	chr11:19108800-19109600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:19108800-19110000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:19108800-19110000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:19109000-19110000	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links