Variant report

Variant	rs72907780
Chromosome Location	chr11:19124012-19124013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19121805..19124602-chr11:19137671..19139188,2	MCF-7	breast:
2	chr11:19123439..19125128-chr11:19261642..19264317,2	MCF-7	breast:
3	chr11:19098962..19100947-chr11:19123727..19125243,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177054	Chromatin interaction
ENSG00000129173	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10444252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10444253	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10444255	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10500837	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024985	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024986	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024987	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024989	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024991	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024992	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024993	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024994	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024995	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024996	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024998	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024999	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025002	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025004	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025005	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025006	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025007	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16936140	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59840223	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889769	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889773	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889781	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889786	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889799	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889802	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72891507	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891510	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907782	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907784	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9299952	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19122800-19125400	Enhancers	Fetal Intestine Small	intestine
2	chr11:19122800-19128000	Enhancers	Fetal Intestine Large	intestine
3	chr11:19123000-19124800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:19123000-19126400	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:19123200-19124400	Enhancers	HUVEC	blood vessel
6	chr11:19123400-19124200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:19123400-19124200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:19123800-19124200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
9	chr11:19123800-19124600	Enhancers	Stomach Mucosa	stomach
10	chr11:19124000-19124200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:19124000-19124200	Enhancers	NHEK	skin
12	chr11:19124000-19124400	Enhancers	Lung	lung
13	chr11:19124000-19124600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr11:19124000-19125000	Enhancers	Gastric	stomach
15	chr11:19124000-19125000	Enhancers	Pancreas	Pancrea
16	chr11:19124000-19125000	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr11:19124000-19125200	Enhancers	Colonic Mucosa	Colon

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