Variant report

Variant	rs72889802
Chromosome Location	chr11:19115909-19115910
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19114030..19116934-chr11:19118802..19120856,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10444252	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10444253	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10444255	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10500837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024985	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024986	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024987	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024988	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11024989	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024990	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024991	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024992	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024993	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025002	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025005	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025006	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025007	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11025008	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16936140	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59840223	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889769	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889773	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72889781	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889786	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889799	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891506	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72891507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907780	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907782	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907784	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907786	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9299952	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19115000-19116200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:19115000-19116200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:19115000-19116200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:19115200-19116000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:19115200-19116000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:19115200-19116000	Enhancers	Fetal Intestine Large	intestine
7	chr11:19115200-19116000	Enhancers	HMEC	breast
8	chr11:19115200-19116000	Enhancers	NH-A	brain
9	chr11:19115200-19116000	Enhancers	Osteobl	bone
10	chr11:19115200-19116800	Enhancers	Fetal Intestine Small	intestine
11	chr11:19115400-19116200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:19115600-19116000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:19115600-19116000	Enhancers	HSMM	muscle
14	chr11:19115600-19116000	Enhancers	HSMMtube	muscle

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