Variant report

Variant	rs59865576
Chromosome Location	chr6:39299937-39299938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39294432..39296636-chr6:39296749..39300031,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3734621	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56894040	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904583	1.00[ASN][1000 genomes]
rs7774977	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462534	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471075	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970392	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39285600-39307800	Weak transcription	Esophagus	oesophagus
2	chr6:39297000-39303600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:39298400-39303400	Weak transcription	Aorta	Aorta
4	chr6:39298600-39301000	Weak transcription	Adipose Nuclei	Adipose
5	chr6:39298600-39303200	Weak transcription	Spleen	Spleen
6	chr6:39298600-39304200	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:39298800-39300200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:39298800-39301200	Weak transcription	Right Atrium	heart
9	chr6:39298800-39303600	Weak transcription	GM12878-XiMat	blood
10	chr6:39298800-39305800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:39298800-39306400	Weak transcription	Gastric	stomach
12	chr6:39298800-39307800	Weak transcription	Brain Anterior Caudate	brain
13	chr6:39298800-39310600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:39299000-39300200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:39299000-39302600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:39299000-39302600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:39299000-39303600	Weak transcription	Primary B cells from cord blood	blood
18	chr6:39299200-39300200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:39299200-39300400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:39299800-39301000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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