Variant report

Variant	rs6904583
Chromosome Location	chr6:39358111-39358112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3734621	1.00[ASN][1000 genomes]
rs56894040	1.00[ASN][1000 genomes]
rs59865576	1.00[ASN][1000 genomes]
rs7774977	1.00[ASN][1000 genomes]
rs9462534	1.00[ASN][1000 genomes]
rs9471075	1.00[ASN][1000 genomes]
rs970392	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39356000-39364000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:39356000-39369600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:39356400-39363200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:39356800-39361600	Weak transcription	Fetal Brain Female	brain
5	chr6:39357000-39361800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:39357600-39358600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:39357600-39365200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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