Variant report

Variant	rs9462534
Chromosome Location	chr6:39306937-39306938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39304974..39307923-chr6:39309564..39312341,2	K562	blood:
2	chr6:39306604..39308297-chr6:39309818..39311499,2	K562	blood:
3	chr6:39306382..39308708-chr6:39313330..39315820,2	K562	blood:
4	chr6:39305987..39307882-chr6:39314320..39317266,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3734621	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56894040	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59865576	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904583	1.00[ASN][1000 genomes]
rs7774977	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471075	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970392	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39285600-39307800	Weak transcription	Esophagus	oesophagus
2	chr6:39298800-39307800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:39298800-39310600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:39300600-39307400	Weak transcription	Brain Substantia Nigra	brain
5	chr6:39301600-39307200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:39302000-39307000	Weak transcription	Fetal Stomach	stomach
7	chr6:39302000-39307600	Weak transcription	Right Atrium	heart
8	chr6:39302200-39307400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:39302600-39311400	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:39303800-39307800	Weak transcription	Aorta	Aorta
11	chr6:39304200-39309000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:39304400-39307400	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:39304400-39308200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:39304400-39310600	Weak transcription	GM12878-XiMat	blood
15	chr6:39304600-39307000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:39304600-39307200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:39304600-39307200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:39304600-39307800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:39304600-39308800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:39304600-39311000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:39304800-39307200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:39304800-39311800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:39305200-39309400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:39305400-39308400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
25	chr6:39305400-39308400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:39305400-39309200	Enhancers	Fetal Thymus	thymus
27	chr6:39305600-39307000	Enhancers	Primary B cells from peripheral blood	blood
28	chr6:39305600-39307600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:39305800-39310200	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr6:39305800-39313000	Enhancers	Fetal Lung	lung
31	chr6:39306000-39308000	Enhancers	Spleen	Spleen
32	chr6:39306200-39307200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:39306200-39307400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:39306400-39307400	Enhancers	Fetal Intestine Large	intestine
35	chr6:39306400-39307600	Enhancers	Fetal Intestine Small	intestine
36	chr6:39306400-39307600	Enhancers	Gastric	stomach
37	chr6:39306400-39308400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr6:39306400-39309200	Enhancers	Lung	lung
39	chr6:39306400-39309200	Enhancers	Pancreas	Pancrea
40	chr6:39306400-39311600	Enhancers	Primary B cells from cord blood	blood
41	chr6:39306600-39307000	Weak transcription	Adipose Nuclei	Adipose
42	chr6:39306600-39307600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:39306600-39313800	Weak transcription	HSMM	muscle
44	chr6:39306800-39308000	Enhancers	HMEC	breast
45	chr6:39306800-39309400	Enhancers	HUES6 Cell Line	embryonic stem cell

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