Variant report

Variant	rs59870469
Chromosome Location	chr3:140800691-140800692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140791406..140795924-chr3:140797541..140801626,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175093	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11925565	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1365631	0.81[EUR][1000 genomes]
rs4683391	0.81[EUR][1000 genomes]
rs4683392	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4683393	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4683547	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683548	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683549	0.81[EUR][1000 genomes]
rs4683550	0.81[EUR][1000 genomes]
rs59179278	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62283579	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62283580	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62283582	0.81[EUR][1000 genomes]
rs6789397	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72980182	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140790600-140802800	Weak transcription	Dnd41	blood
2	chr3:140792800-140808400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:140793400-140806600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:140794000-140813000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:140796400-140801400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:140796600-140806600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:140796600-140807200	Enhancers	Fetal Heart	heart
8	chr3:140797000-140804400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:140797000-140805000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:140797200-140802200	Weak transcription	Psoas Muscle	Psoas
11	chr3:140797200-140802200	Weak transcription	HSMM	muscle
12	chr3:140797200-140802400	Weak transcription	Right Ventricle	heart
13	chr3:140797200-140802600	Weak transcription	Fetal Intestine Large	intestine
14	chr3:140797200-140802600	Weak transcription	Fetal Intestine Small	intestine
15	chr3:140797200-140802800	Weak transcription	Fetal Kidney	kidney
16	chr3:140797200-140811200	Weak transcription	Fetal Brain Male	brain
17	chr3:140797400-140800800	Weak transcription	Adipose Nuclei	Adipose
18	chr3:140797400-140800800	Weak transcription	HSMMtube	muscle
19	chr3:140797400-140801000	Weak transcription	Lung	lung
20	chr3:140797400-140802000	Weak transcription	Left Ventricle	heart
21	chr3:140797400-140802000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr3:140797400-140802400	Weak transcription	Right Atrium	heart
23	chr3:140797800-140801000	Weak transcription	Placenta	Placenta
24	chr3:140797800-140801600	Weak transcription	Fetal Stomach	stomach
25	chr3:140797800-140801600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:140797800-140804600	Weak transcription	Fetal Brain Female	brain
27	chr3:140798400-140802000	Weak transcription	Brain Germinal Matrix	brain
28	chr3:140798400-140803000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr3:140798400-140803800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:140798400-140804600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:140798400-140806800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:140798600-140801400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr3:140798600-140802200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:140799000-140802400	Genic enhancers	Fetal Muscle Trunk	muscle
35	chr3:140799200-140801200	Genic enhancers	Fetal Muscle Leg	muscle
36	chr3:140799200-140801400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr3:140799600-140801200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr3:140799600-140805200	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr3:140799600-140808600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:140799800-140801400	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr3:140799800-140801400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr3:140799800-140801400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr3:140799800-140803600	Enhancers	Pancreas	Pancrea
44	chr3:140800000-140801200	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr3:140800200-140801400	Bivalent Enhancer	HepG2	liver
46	chr3:140800400-140801200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:140800400-140801200	Enhancers	Fetal Lung	lung
48	chr3:140800600-140801000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:140800600-140801200	Enhancers	H9 Cell Line	embryonic stem cell
50	chr3:140800600-140801200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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