Variant report

Variant	rs59179278
Chromosome Location	chr3:140802898-140802899
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140802398..140804729-chr3:140810724..140812835,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11919846	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11919859	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11925565	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11927097	0.82[EUR][1000 genomes]
rs1365631	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2086180	0.85[EUR][1000 genomes]
rs35816243	0.82[EUR][1000 genomes]
rs4683391	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4683392	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4683393	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4683394	0.85[EUR][1000 genomes]
rs4683547	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683548	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683549	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4683550	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4683552	0.96[EUR][1000 genomes]
rs4683558	0.86[EUR][1000 genomes]
rs59276022	0.90[EUR][1000 genomes]
rs59870469	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62283579	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62283580	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283582	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62283585	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62283586	0.96[EUR][1000 genomes]
rs62283587	0.96[EUR][1000 genomes]
rs62283588	0.93[EUR][1000 genomes]
rs62283592	0.88[EUR][1000 genomes]
rs62283593	0.88[EUR][1000 genomes]
rs62283596	0.86[EUR][1000 genomes]
rs62283597	0.88[EUR][1000 genomes]
rs62283598	0.88[EUR][1000 genomes]
rs62283600	0.88[EUR][1000 genomes]
rs62283603	0.82[EUR][1000 genomes]
rs62283605	0.81[EUR][1000 genomes]
rs6650888	0.88[EUR][1000 genomes]
rs6789397	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72980182	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72980194	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs72981978	0.96[EUR][1000 genomes]
rs72981996	0.90[EUR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140792800-140808400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:140793400-140806600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:140794000-140813000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:140796600-140806600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:140796600-140807200	Enhancers	Fetal Heart	heart
6	chr3:140797000-140804400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:140797000-140805000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:140797200-140811200	Weak transcription	Fetal Brain Male	brain
9	chr3:140797800-140804600	Weak transcription	Fetal Brain Female	brain
10	chr3:140798400-140803000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:140798400-140803800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:140798400-140804600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:140798400-140806800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:140799600-140805200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:140799600-140808600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:140799800-140803600	Enhancers	Pancreas	Pancrea
17	chr3:140801000-140803800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:140801200-140803600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:140801200-140803800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:140801200-140807200	Enhancers	Fetal Muscle Leg	muscle
21	chr3:140801400-140803800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:140801600-140803400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr3:140801600-140803800	Enhancers	Fetal Stomach	stomach
24	chr3:140802000-140803600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr3:140802000-140804000	Enhancers	Placenta	Placenta
26	chr3:140802000-140804200	Enhancers	Left Ventricle	heart
27	chr3:140802000-140806600	Enhancers	Brain Germinal Matrix	brain
28	chr3:140802000-140807400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr3:140802200-140803000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr3:140802200-140803000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr3:140802200-140803400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:140802200-140803400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:140802200-140804000	Enhancers	Fetal Lung	lung
34	chr3:140802200-140805000	Enhancers	HSMM	muscle
35	chr3:140802200-140806400	Enhancers	Psoas Muscle	Psoas
36	chr3:140802400-140803000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr3:140802400-140803200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr3:140802400-140803400	Enhancers	Right Atrium	heart
39	chr3:140802400-140803800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr3:140802400-140804200	Enhancers	HSMMtube	muscle
41	chr3:140802400-140804800	Enhancers	Fetal Muscle Trunk	muscle
42	chr3:140802400-140804800	Enhancers	Right Ventricle	heart
43	chr3:140802600-140803000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr3:140802600-140803200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr3:140802600-140803400	Enhancers	Fetal Intestine Large	intestine
46	chr3:140802600-140803400	Enhancers	Fetal Intestine Small	intestine
47	chr3:140802600-140805600	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr3:140802600-140805800	Enhancers	Adipose Nuclei	Adipose
49	chr3:140802800-140804600	Strong transcription	Dnd41	blood
50	chr3:140802800-140804800	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links