Variant report

Variant	rs62283586
Chromosome Location	chr3:140809104-140809105
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:140808637..140811599-chr3:140816157..140818105,3	K562	blood:
2	chr3:140804888..140806515-chr3:140808007..140809578,2	K562	blood:
3	chr3:140808637..140811599-chr3:140816157..140817670,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11919846	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11919859	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11925565	0.96[EUR][1000 genomes]
rs11927097	0.83[EUR][1000 genomes]
rs1365631	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2086180	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35816243	0.83[EUR][1000 genomes]
rs4683391	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683392	0.97[EUR][1000 genomes]
rs4683393	0.97[EUR][1000 genomes]
rs4683394	0.86[EUR][1000 genomes]
rs4683547	0.93[EUR][1000 genomes]
rs4683548	0.93[EUR][1000 genomes]
rs4683549	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683550	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683552	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683558	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59179278	0.96[EUR][1000 genomes]
rs59276022	0.91[EUR][1000 genomes]
rs62283579	0.92[EUR][1000 genomes]
rs62283580	0.96[EUR][1000 genomes]
rs62283582	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62283585	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283587	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283588	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62283592	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62283593	0.89[EUR][1000 genomes]
rs62283596	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62283597	0.89[EUR][1000 genomes]
rs62283598	0.89[EUR][1000 genomes]
rs62283600	0.89[EUR][1000 genomes]
rs62283603	0.83[EUR][1000 genomes]
rs62283605	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6650888	0.89[EUR][1000 genomes]
rs72980182	0.93[EUR][1000 genomes]
rs72980194	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981978	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981996	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140794000-140813000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:140797200-140811200	Weak transcription	Fetal Brain Male	brain
3	chr3:140803000-140813800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:140803400-140810000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:140805200-140810400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:140805400-140811600	Weak transcription	Fetal Brain Female	brain
7	chr3:140806400-140809600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:140806400-140811200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:140806400-140811400	Weak transcription	Right Ventricle	heart
10	chr3:140806400-140811600	Weak transcription	Psoas Muscle	Psoas
11	chr3:140806600-140809800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:140806600-140810000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:140806600-140810400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:140806600-140810400	Weak transcription	Left Ventricle	heart
15	chr3:140806600-140810600	Weak transcription	Fetal Thymus	thymus
16	chr3:140806600-140811800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:140806800-140813800	Weak transcription	Placenta	Placenta
18	chr3:140807000-140811600	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:140807000-140811600	Weak transcription	HSMM	muscle
20	chr3:140807200-140809400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:140807200-140814400	Weak transcription	Fetal Kidney	kidney
22	chr3:140807400-140809800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:140808200-140810400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:140808400-140809400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:140808400-140809600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:140808400-140813800	Enhancers	Fetal Muscle Leg	muscle
27	chr3:140808400-140813800	Weak transcription	Lung	lung
28	chr3:140808600-140809800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:140808600-140809800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr3:140808600-140810200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:140808600-140810600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:140808600-140810600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:140808800-140809200	Weak transcription	Pancreas	Pancrea
34	chr3:140808800-140810200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:140808800-140810400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:140808800-140810600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:140808800-140811800	Weak transcription	HSMMtube	muscle
38	chr3:140809000-140809200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr3:140809000-140810200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:140809000-140810200	Weak transcription	Fetal Heart	heart
41	chr3:140809000-140810400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:140809000-140810400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:140809000-140811600	Weak transcription	Right Atrium	heart
44	chr3:140809000-140813200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr3:140809000-140818800	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links