Variant report

Variant	rs62283600
Chromosome Location	chr3:140843632-140843633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11919846	0.89[EUR][1000 genomes]
rs11919859	0.89[EUR][1000 genomes]
rs11925565	0.88[EUR][1000 genomes]
rs11927097	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365631	0.88[EUR][1000 genomes]
rs1426972	0.80[AFR][1000 genomes]
rs2086180	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35816243	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683391	0.88[EUR][1000 genomes]
rs4683392	0.86[EUR][1000 genomes]
rs4683393	0.86[EUR][1000 genomes]
rs4683394	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683395	0.88[AFR][1000 genomes]
rs4683396	0.88[AFR][1000 genomes]
rs4683547	0.85[EUR][1000 genomes]
rs4683548	0.85[EUR][1000 genomes]
rs4683549	0.88[EUR][1000 genomes]
rs4683550	0.88[EUR][1000 genomes]
rs4683552	0.89[EUR][1000 genomes]
rs4683558	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59179278	0.88[EUR][1000 genomes]
rs59276022	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283579	0.84[EUR][1000 genomes]
rs62283580	0.88[EUR][1000 genomes]
rs62283582	0.88[EUR][1000 genomes]
rs62283585	0.89[EUR][1000 genomes]
rs62283586	0.89[EUR][1000 genomes]
rs62283587	0.89[EUR][1000 genomes]
rs62283588	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62283592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283593	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283595	0.84[EUR][1000 genomes]
rs62283596	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62283597	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283598	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283599	0.86[ASN][1000 genomes]
rs62283603	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62283605	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6650888	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72980182	0.85[EUR][1000 genomes]
rs72980194	0.89[EUR][1000 genomes]
rs72981978	0.89[EUR][1000 genomes]
rs72981996	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636278	0.80[AFR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140823800-140846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:140832400-140845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:140841400-140843800	Enhancers	Left Ventricle	heart
4	chr3:140841400-140846600	Enhancers	Pancreas	Pancrea
5	chr3:140841800-140845000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:140841800-140846000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:140841800-140846000	Weak transcription	Dnd41	blood
8	chr3:140841800-140846200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:140841800-140846400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:140842000-140845200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:140842600-140843800	Enhancers	Right Atrium	heart
12	chr3:140843200-140843800	Enhancers	Fetal Heart	heart
13	chr3:140843200-140844000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr3:140843200-140844400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:140843200-140844400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:140843200-140845000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:140843400-140845000	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:140843400-140847800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:140843600-140845800	Weak transcription	Right Ventricle	heart

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