Variant report

Variant	rs62283592
Chromosome Location	chr3:140824888-140824889
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:140804684..140806948-chr3:140822512..140824898,2	MCF-7	breast:
2	chr3:140730331..140730836-chr3:140824547..140825369,2	MCF-7	breast:
3	chr3:140616885..140617460-chr3:140824337..140825043,2	MCF-7	breast:
4	chr3:140660148..140662390-chr3:140823082..140825117,3	K562	blood:
5	chr3:140824451..140825371-chr3:140910899..140911704,4	MCF-7	breast:
6	chr3:140717229..140719563-chr3:140823264..140825476,2	MCF-7	breast:
7	chr3:140718866..140719549-chr3:140824500..140825196,2	MCF-7	breast:
8	chr3:140729944..140731021-chr3:140824351..140825477,16	MCF-7	breast:
9	chr3:140823445..140826170-chr3:140830497..140833363,2	K562	blood:
10	chr3:140814634..140816537-chr3:140823066..140825943,2	MCF-7	breast:
11	chr3:140727306..140728219-chr3:140824324..140824933,2	MCF-7	breast:
12	chr3:140641446..140642192-chr3:140824178..140825116,5	K562	blood:
13	chr3:140730100..140731030-chr3:140824316..140825563,6	K562	blood:
14	chr3:140718684..140720140-chr3:140824242..140825601,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000114120	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11919846	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11919859	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11925565	0.88[EUR][1000 genomes]
rs11927097	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365631	0.88[EUR][1000 genomes]
rs2086180	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35816243	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683391	0.88[EUR][1000 genomes]
rs4683392	0.86[EUR][1000 genomes]
rs4683393	0.86[EUR][1000 genomes]
rs4683394	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683547	0.85[EUR][1000 genomes]
rs4683548	0.85[EUR][1000 genomes]
rs4683549	0.88[EUR][1000 genomes]
rs4683550	0.88[EUR][1000 genomes]
rs4683552	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4683558	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59179278	0.88[EUR][1000 genomes]
rs59276022	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283579	0.84[EUR][1000 genomes]
rs62283580	0.88[EUR][1000 genomes]
rs62283582	0.88[EUR][1000 genomes]
rs62283585	0.89[EUR][1000 genomes]
rs62283586	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62283587	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62283588	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62283593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283595	0.84[EUR][1000 genomes]
rs62283596	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62283597	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283598	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283599	0.86[ASN][1000 genomes]
rs62283600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283603	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62283605	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6650888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72980182	0.85[EUR][1000 genomes]
rs72980194	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72981978	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72981996	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140814800-140827400	Weak transcription	Right Atrium	heart
2	chr3:140815000-140828200	Weak transcription	Psoas Muscle	Psoas
3	chr3:140817000-140827000	Weak transcription	Left Ventricle	heart
4	chr3:140819600-140825000	Weak transcription	Dnd41	blood
5	chr3:140821400-140829000	Enhancers	Fetal Heart	heart
6	chr3:140821600-140825000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:140821600-140825200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:140821600-140825200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:140821600-140825400	Enhancers	Fetal Muscle Leg	muscle
10	chr3:140822200-140825400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:140823000-140825200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:140823000-140825200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:140823000-140829200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:140823000-140829800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr3:140823400-140827000	Weak transcription	Fetal Thymus	thymus
16	chr3:140823600-140825000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:140823600-140825400	Enhancers	Fetal Muscle Trunk	muscle
18	chr3:140823600-140828000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:140823600-140828200	Weak transcription	HSMMtube	muscle
20	chr3:140823600-140830400	Weak transcription	Fetal Stomach	stomach
21	chr3:140823800-140846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:140824000-140825000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:140824200-140825000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:140824200-140825200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:140824200-140828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:140824400-140825200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr3:140824400-140829200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:140824400-140833800	Weak transcription	Placenta	Placenta
29	chr3:140824600-140825200	Enhancers	Fetal Kidney	kidney
30	chr3:140824600-140827400	Weak transcription	Pancreas	Pancrea
31	chr3:140824600-140828200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:140824600-140831600	Weak transcription	Fetal Lung	lung
33	chr3:140824800-140825000	Enhancers	Brain Germinal Matrix	brain
34	chr3:140824800-140825000	Enhancers	Lung	lung
35	chr3:140824800-140825200	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr3:140824800-140825200	Enhancers	H9 Cell Line	embryonic stem cell
37	chr3:140824800-140825200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr3:140824800-140825200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr3:140824800-140825200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr3:140824800-140825200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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