Variant report

Variant	rs35816243
Chromosome Location	chr3:140849492-140849493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140789863..140792661-chr3:140847892..140850124,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11919846	0.83[EUR][1000 genomes]
rs11919859	0.83[EUR][1000 genomes]
rs11925565	0.82[EUR][1000 genomes]
rs11927097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365631	0.82[EUR][1000 genomes]
rs2086180	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683391	0.82[EUR][1000 genomes]
rs4683392	0.81[EUR][1000 genomes]
rs4683393	0.81[EUR][1000 genomes]
rs4683394	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683547	0.80[EUR][1000 genomes]
rs4683548	0.80[EUR][1000 genomes]
rs4683549	0.82[EUR][1000 genomes]
rs4683550	0.82[EUR][1000 genomes]
rs4683552	0.83[EUR][1000 genomes]
rs4683558	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59179278	0.82[EUR][1000 genomes]
rs59276022	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283580	0.82[EUR][1000 genomes]
rs62283582	0.82[EUR][1000 genomes]
rs62283585	0.83[EUR][1000 genomes]
rs62283586	0.83[EUR][1000 genomes]
rs62283587	0.83[EUR][1000 genomes]
rs62283588	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62283592	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283593	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283596	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62283597	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283598	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283599	0.86[ASN][1000 genomes]
rs62283600	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283603	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62283605	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6650888	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72980182	0.80[EUR][1000 genomes]
rs72980194	0.83[EUR][1000 genomes]
rs72981978	0.83[EUR][1000 genomes]
rs72981996	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140845000-140850000	Enhancers	Fetal Muscle Leg	muscle
2	chr3:140846200-140851800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:140846400-140862000	Weak transcription	Fetal Heart	heart
4	chr3:140847200-140869000	Weak transcription	Right Ventricle	heart
5	chr3:140847400-140850400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:140847800-140849800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:140848400-140850000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:140848600-140859600	Weak transcription	Dnd41	blood
9	chr3:140849000-140860600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:140849200-140854000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links