Variant report

Variant	rs62283596
Chromosome Location	chr3:140832385-140832386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140823445..140826170-chr3:140830497..140833363,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11919846	0.87[EUR][1000 genomes]
rs11919859	0.87[EUR][1000 genomes]
rs11925565	0.86[EUR][1000 genomes]
rs11927097	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1365631	0.86[EUR][1000 genomes]
rs2086180	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35816243	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4683391	0.86[EUR][1000 genomes]
rs4683392	0.85[EUR][1000 genomes]
rs4683393	0.85[EUR][1000 genomes]
rs4683394	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4683547	0.84[EUR][1000 genomes]
rs4683548	0.84[EUR][1000 genomes]
rs4683549	0.86[EUR][1000 genomes]
rs4683550	0.86[EUR][1000 genomes]
rs4683552	0.87[EUR][1000 genomes]
rs4683558	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59179278	0.86[EUR][1000 genomes]
rs59276022	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62283579	0.83[EUR][1000 genomes]
rs62283580	0.86[EUR][1000 genomes]
rs62283582	0.86[EUR][1000 genomes]
rs62283585	0.87[EUR][1000 genomes]
rs62283586	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62283587	0.87[EUR][1000 genomes]
rs62283588	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62283592	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62283593	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62283595	0.83[EUR][1000 genomes]
rs62283597	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62283598	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62283600	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62283603	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62283605	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6650888	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72980182	0.84[EUR][1000 genomes]
rs72980194	0.87[EUR][1000 genomes]
rs72981978	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72981996	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140823800-140846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:140824400-140833800	Weak transcription	Placenta	Placenta
3	chr3:140827400-140832400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:140827600-140832400	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:140828200-140835000	Weak transcription	Fetal Kidney	kidney
6	chr3:140828400-140833200	Weak transcription	Pancreas	Pancrea
7	chr3:140828400-140833200	Weak transcription	Right Atrium	heart
8	chr3:140828600-140833800	Weak transcription	Right Ventricle	heart
9	chr3:140829000-140833200	Weak transcription	Left Ventricle	heart
10	chr3:140829000-140835000	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:140829400-140833800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:140829400-140841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:140829600-140832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:140829600-140836200	Enhancers	Fetal Muscle Leg	muscle
15	chr3:140829800-140833200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:140829800-140833400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:140829800-140835000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:140830200-140832400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:140831200-140834800	Weak transcription	Dnd41	blood
20	chr3:140831400-140835800	Enhancers	Fetal Heart	heart
21	chr3:140831800-140832600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:140831800-140833000	Weak transcription	Fetal Stomach	stomach
23	chr3:140831800-140835000	Weak transcription	Fetal Thymus	thymus
24	chr3:140832000-140833600	Weak transcription	Fetal Lung	lung
25	chr3:140832200-140832600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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