Variant report

Variant	rs59276022
Chromosome Location	chr3:140816789-140816790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140808637..140811599-chr3:140816157..140817670,2	K562	blood:
2	chr3:140808637..140811599-chr3:140816157..140818105,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11919846	0.91[EUR][1000 genomes]
rs11919859	0.91[EUR][1000 genomes]
rs11925565	0.90[EUR][1000 genomes]
rs11927097	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365631	0.90[EUR][1000 genomes]
rs2086180	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35816243	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683391	0.90[EUR][1000 genomes]
rs4683392	0.89[EUR][1000 genomes]
rs4683393	0.89[EUR][1000 genomes]
rs4683394	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683547	0.88[EUR][1000 genomes]
rs4683548	0.88[EUR][1000 genomes]
rs4683549	0.90[EUR][1000 genomes]
rs4683550	0.90[EUR][1000 genomes]
rs4683552	0.91[EUR][1000 genomes]
rs4683558	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59179278	0.90[EUR][1000 genomes]
rs62283579	0.87[EUR][1000 genomes]
rs62283580	0.90[EUR][1000 genomes]
rs62283582	0.90[EUR][1000 genomes]
rs62283585	0.91[EUR][1000 genomes]
rs62283586	0.91[EUR][1000 genomes]
rs62283587	0.91[EUR][1000 genomes]
rs62283588	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62283592	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283593	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283595	0.81[EUR][1000 genomes]
rs62283596	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62283597	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283598	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283599	0.86[ASN][1000 genomes]
rs62283600	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283603	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62283605	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6650888	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72980182	0.88[EUR][1000 genomes]
rs72980194	0.91[EUR][1000 genomes]
rs72981978	0.91[EUR][1000 genomes]
rs72981996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140809000-140818800	Weak transcription	Dnd41	blood
2	chr3:140810400-140817000	Enhancers	Left Ventricle	heart
3	chr3:140810800-140823200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:140814200-140816800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:140814200-140821600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:140814200-140821800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:140814800-140827400	Weak transcription	Right Atrium	heart
8	chr3:140815000-140818600	Weak transcription	Pancreas	Pancrea
9	chr3:140815000-140821800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:140815000-140828200	Weak transcription	Psoas Muscle	Psoas
11	chr3:140815200-140818200	Weak transcription	HSMMtube	muscle
12	chr3:140815200-140818400	Weak transcription	Fetal Heart	heart
13	chr3:140815400-140819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:140815600-140822000	Weak transcription	Brain Germinal Matrix	brain
15	chr3:140816000-140816800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:140816000-140820200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:140816200-140822200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:140816400-140819000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:140816600-140816800	Weak transcription	Right Ventricle	heart
20	chr3:140816600-140820000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:140816600-140821600	Weak transcription	Fetal Muscle Leg	muscle

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