Variant report

Variant	rs4683547
Chromosome Location	chr3:140801587-140801588
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140791406..140795924-chr3:140797541..140801626,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175093	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11919846	0.93[EUR][1000 genomes]
rs11919859	0.93[EUR][1000 genomes]
rs11925565	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11927097	0.80[EUR][1000 genomes]
rs11928846	0.91[CEU][hapmap]
rs12494997	0.84[CEU][hapmap]
rs1365631	0.97[EUR][1000 genomes]
rs1426962	0.84[CEU][hapmap]
rs1426963	0.84[CEU][hapmap]
rs1426972	0.82[JPT][hapmap]
rs1559896	0.80[CEU][hapmap]
rs2086180	0.82[EUR][1000 genomes]
rs35816243	0.80[EUR][1000 genomes]
rs4683391	0.97[EUR][1000 genomes]
rs4683392	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4683393	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4683394	0.82[EUR][1000 genomes]
rs4683546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4683548	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683549	0.97[EUR][1000 genomes]
rs4683550	0.97[EUR][1000 genomes]
rs4683552	0.93[EUR][1000 genomes]
rs4683558	0.84[EUR][1000 genomes]
rs59179278	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59276022	0.88[EUR][1000 genomes]
rs59870469	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62283579	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62283580	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62283582	0.97[EUR][1000 genomes]
rs62283585	0.93[EUR][1000 genomes]
rs62283586	0.93[EUR][1000 genomes]
rs62283587	0.93[EUR][1000 genomes]
rs62283588	0.90[EUR][1000 genomes]
rs62283592	0.85[EUR][1000 genomes]
rs62283593	0.85[EUR][1000 genomes]
rs62283596	0.84[EUR][1000 genomes]
rs62283597	0.85[EUR][1000 genomes]
rs62283598	0.85[EUR][1000 genomes]
rs62283600	0.85[EUR][1000 genomes]
rs62283603	0.80[EUR][1000 genomes]
rs6650888	0.85[EUR][1000 genomes]
rs6789397	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6793789	0.84[CEU][hapmap]
rs6804474	0.83[CEU][hapmap]
rs72980182	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72980194	0.93[EUR][1000 genomes]
rs72981978	0.93[EUR][1000 genomes]
rs72981996	0.88[EUR][1000 genomes]
rs7622090	0.84[CEU][hapmap]
rs919157	0.83[CEU][hapmap]
rs9817298	0.83[CEU][hapmap]
rs9823283	0.83[CEU][hapmap]
rs9823690	0.83[CEU][hapmap]
rs9882989	0.82[CEU][hapmap]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140790600-140802800	Weak transcription	Dnd41	blood
2	chr3:140792800-140808400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:140793400-140806600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:140794000-140813000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:140796600-140806600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:140796600-140807200	Enhancers	Fetal Heart	heart
7	chr3:140797000-140804400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:140797000-140805000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:140797200-140802200	Weak transcription	Psoas Muscle	Psoas
10	chr3:140797200-140802200	Weak transcription	HSMM	muscle
11	chr3:140797200-140802400	Weak transcription	Right Ventricle	heart
12	chr3:140797200-140802600	Weak transcription	Fetal Intestine Large	intestine
13	chr3:140797200-140802600	Weak transcription	Fetal Intestine Small	intestine
14	chr3:140797200-140802800	Weak transcription	Fetal Kidney	kidney
15	chr3:140797200-140811200	Weak transcription	Fetal Brain Male	brain
16	chr3:140797400-140802000	Weak transcription	Left Ventricle	heart
17	chr3:140797400-140802000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:140797400-140802400	Weak transcription	Right Atrium	heart
19	chr3:140797800-140801600	Weak transcription	Fetal Stomach	stomach
20	chr3:140797800-140801600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:140797800-140804600	Weak transcription	Fetal Brain Female	brain
22	chr3:140798400-140802000	Weak transcription	Brain Germinal Matrix	brain
23	chr3:140798400-140803000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr3:140798400-140803800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:140798400-140804600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:140798400-140806800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:140798600-140802200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:140799000-140802400	Genic enhancers	Fetal Muscle Trunk	muscle
29	chr3:140799600-140805200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr3:140799600-140808600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:140799800-140803600	Enhancers	Pancreas	Pancrea
32	chr3:140801000-140803800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:140801200-140801600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr3:140801200-140802000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:140801200-140802000	Weak transcription	Placenta	Placenta
36	chr3:140801200-140802200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr3:140801200-140802200	Weak transcription	Fetal Lung	lung
38	chr3:140801200-140802400	Weak transcription	HSMMtube	muscle
39	chr3:140801200-140802600	Weak transcription	Adipose Nuclei	Adipose
40	chr3:140801200-140803600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:140801200-140803800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:140801200-140807200	Enhancers	Fetal Muscle Leg	muscle
43	chr3:140801400-140802200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr3:140801400-140802200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr3:140801400-140802400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr3:140801400-140802400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:140801400-140802600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr3:140801400-140803800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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