Variant report

Variant	rs4683558
Chromosome Location	chr3:140826834-140826835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11919846	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11919859	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11925565	0.86[EUR][1000 genomes]
rs11927097	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1365631	0.86[EUR][1000 genomes]
rs2086180	0.83[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35816243	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4683391	0.86[EUR][1000 genomes]
rs4683392	0.85[EUR][1000 genomes]
rs4683393	0.85[EUR][1000 genomes]
rs4683394	1.00[CEU][hapmap];0.89[JPT][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4683547	0.84[EUR][1000 genomes]
rs4683548	0.84[EUR][1000 genomes]
rs4683549	0.86[EUR][1000 genomes]
rs4683550	0.86[EUR][1000 genomes]
rs4683552	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59179278	0.86[EUR][1000 genomes]
rs59276022	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62283579	0.83[EUR][1000 genomes]
rs62283580	0.86[EUR][1000 genomes]
rs62283582	0.86[EUR][1000 genomes]
rs62283585	0.87[EUR][1000 genomes]
rs62283586	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62283587	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62283588	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62283592	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62283593	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62283595	0.83[EUR][1000 genomes]
rs62283596	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62283597	0.99[EUR][1000 genomes]
rs62283598	0.99[EUR][1000 genomes]
rs62283600	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62283603	0.93[EUR][1000 genomes]
rs62283605	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6650888	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72980182	0.84[EUR][1000 genomes]
rs72980194	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72981978	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72981996	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140814800-140827400	Weak transcription	Right Atrium	heart
2	chr3:140815000-140828200	Weak transcription	Psoas Muscle	Psoas
3	chr3:140817000-140827000	Weak transcription	Left Ventricle	heart
4	chr3:140821400-140829000	Enhancers	Fetal Heart	heart
5	chr3:140823000-140829200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:140823000-140829800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr3:140823400-140827000	Weak transcription	Fetal Thymus	thymus
8	chr3:140823600-140828000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:140823600-140828200	Weak transcription	HSMMtube	muscle
10	chr3:140823600-140830400	Weak transcription	Fetal Stomach	stomach
11	chr3:140823800-140846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:140824200-140828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:140824400-140829200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:140824400-140833800	Weak transcription	Placenta	Placenta
15	chr3:140824600-140827400	Weak transcription	Pancreas	Pancrea
16	chr3:140824600-140828200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:140824600-140831600	Weak transcription	Fetal Lung	lung
18	chr3:140825000-140827400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:140825200-140827200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:140825200-140827600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:140825200-140828000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:140825400-140827000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:140825400-140828200	Weak transcription	Dnd41	blood
24	chr3:140825800-140827200	Weak transcription	Fetal Kidney	kidney
25	chr3:140826400-140827200	Enhancers	Fetal Muscle Trunk	muscle
26	chr3:140826400-140827800	Enhancers	Fetal Muscle Leg	muscle
27	chr3:140826600-140827200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr3:140826600-140827800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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