Variant report

Variant	rs72981978
Chromosome Location	chr3:140811639-140811640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140806017..140807926-chr3:140810663..140813507,2	K562	blood:
2	chr3:140802398..140804729-chr3:140810724..140812835,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11919846	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11919859	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11925565	0.96[EUR][1000 genomes]
rs11927097	0.83[EUR][1000 genomes]
rs1365631	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2086180	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35816243	0.83[EUR][1000 genomes]
rs4683391	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683392	0.97[EUR][1000 genomes]
rs4683393	0.97[EUR][1000 genomes]
rs4683394	0.86[EUR][1000 genomes]
rs4683547	0.93[EUR][1000 genomes]
rs4683548	0.93[EUR][1000 genomes]
rs4683549	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683550	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683552	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683558	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59179278	0.96[EUR][1000 genomes]
rs59276022	0.91[EUR][1000 genomes]
rs62283579	0.92[EUR][1000 genomes]
rs62283580	0.96[EUR][1000 genomes]
rs62283582	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62283585	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283586	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283587	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283588	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62283592	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62283593	0.89[EUR][1000 genomes]
rs62283596	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62283597	0.89[EUR][1000 genomes]
rs62283598	0.89[EUR][1000 genomes]
rs62283600	0.89[EUR][1000 genomes]
rs62283603	0.83[EUR][1000 genomes]
rs62283605	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6650888	0.89[EUR][1000 genomes]
rs72980182	0.93[EUR][1000 genomes]
rs72980194	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981996	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140794000-140813000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:140803000-140813800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:140806600-140811800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:140806800-140813800	Weak transcription	Placenta	Placenta
5	chr3:140807200-140814400	Weak transcription	Fetal Kidney	kidney
6	chr3:140808400-140813800	Enhancers	Fetal Muscle Leg	muscle
7	chr3:140808400-140813800	Weak transcription	Lung	lung
8	chr3:140808800-140811800	Weak transcription	HSMMtube	muscle
9	chr3:140809000-140813200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:140809000-140818800	Weak transcription	Dnd41	blood
11	chr3:140809200-140815000	Enhancers	Pancreas	Pancrea
12	chr3:140809400-140813000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:140809400-140813800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:140809600-140813600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:140809600-140815400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:140809800-140811800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:140809800-140812600	Enhancers	Brain Germinal Matrix	brain
18	chr3:140809800-140812600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:140809800-140813600	Enhancers	Fetal Muscle Trunk	muscle
20	chr3:140810000-140812800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr3:140810200-140813400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:140810200-140814200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:140810200-140815000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:140810200-140815200	Enhancers	Fetal Heart	heart
25	chr3:140810400-140813800	Weak transcription	Brain Anterior Caudate	brain
26	chr3:140810400-140814200	Enhancers	H1 Cell Line	embryonic stem cell
27	chr3:140810400-140814800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr3:140810400-140815000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:140810400-140817000	Enhancers	Left Ventricle	heart
30	chr3:140810600-140811800	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr3:140810800-140812400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr3:140810800-140813000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:140810800-140813200	Weak transcription	Fetal Thymus	thymus
34	chr3:140810800-140823200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:140811000-140813800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr3:140811200-140813000	Enhancers	Rectal Smooth Muscle	rectum
37	chr3:140811200-140813400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr3:140811200-140813600	Enhancers	Fetal Brain Male	brain
39	chr3:140811200-140814000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr3:140811200-140814000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr3:140811400-140811800	Enhancers	H9 Cell Line	embryonic stem cell
42	chr3:140811400-140812600	Enhancers	Stomach Smooth Muscle	stomach
43	chr3:140811400-140813200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:140811400-140813800	Enhancers	Right Ventricle	heart
45	chr3:140811600-140813600	Enhancers	Fetal Brain Female	brain
46	chr3:140811600-140813800	Enhancers	Colon Smooth Muscle	Colon
47	chr3:140811600-140813800	Enhancers	Psoas Muscle	Psoas
48	chr3:140811600-140813800	Enhancers	Right Atrium	heart
49	chr3:140811600-140813800	Enhancers	HSMM	muscle

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