Variant report

Variant	rs1426972
Chromosome Location	chr3:140844597-140844598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11918400	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11927534	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12107162	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3940907	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4683392	0.84[ASN][1000 genomes]
rs4683393	0.84[ASN][1000 genomes]
rs4683394	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs4683395	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4683396	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4683546	0.85[JPT][hapmap]
rs4683547	0.82[JPT][hapmap]
rs4683559	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62283600	0.80[AFR][1000 genomes]
rs7430058	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7636278	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7645147	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140823800-140846800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:140832400-140845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:140841400-140846600	Enhancers	Pancreas	Pancrea
4	chr3:140841800-140845000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:140841800-140846000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:140841800-140846000	Weak transcription	Dnd41	blood
7	chr3:140841800-140846200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:140841800-140846400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:140842000-140845200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:140843200-140845000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:140843400-140845000	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:140843400-140847800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:140843600-140845800	Weak transcription	Right Ventricle	heart
14	chr3:140843800-140845600	Weak transcription	Fetal Heart	heart
15	chr3:140843800-140845600	Weak transcription	Left Ventricle	heart
16	chr3:140844000-140846000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:140844400-140844600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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